NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15087.1 Public Mus musculus 1 Acsl3 23 108 98 CCDS HistoryNCBI Gene:74205Re-query CCDS DB by CCDS ID:15087.1Re-query CCDS DB by GeneID:74205See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035779.14 ENSMUSP00000045291.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035779.14Link to Ensembl Protein Viewer:ENSMUSP00000045291.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035779Re-query CCDS DB by Protein ID:ENSMUSP00000045291
Original member Current member EBI ENSMUST00000142704.7 ENSMUSP00000121695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142704.7Link to Ensembl Protein Viewer:ENSMUSP00000121695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142704Re-query CCDS DB by Protein ID:ENSMUSP00000121695
Original member NCBI NM_001033606.2 NP_001028778.2 Updated not alive Link to Nucleotide Sequence:NM_001033606.2Link to Protein Sequence:NP_001028778.2Re-query CCDS DB by Nucleotide ID:NM_001033606Re-query CCDS DB by Protein ID:NP_001028778
Current member NCBI NM_001033606.3 NP_001028778.2 Accepted alive Link to Nucleotide Sequence:NM_001033606.3Link to Protein Sequence:NP_001028778.2Re-query CCDS DB by Nucleotide ID:NM_001033606Re-query CCDS DB by Protein ID:NP_001028778Link to BLAST:NP_001028778.2
Original member NCBI NM_028817.3 NP_083093.2 Updated not alive Link to Nucleotide Sequence:NM_028817.3Link to Protein Sequence:NP_083093.2Re-query CCDS DB by Nucleotide ID:NM_028817Re-query CCDS DB by Protein ID:NP_083093
Current member NCBI NM_028817.4 NP_083093.2 Accepted alive Link to Nucleotide Sequence:NM_028817.4Link to Protein Sequence:NP_083093.2Re-query CCDS DB by Nucleotide ID:NM_028817Re-query CCDS DB by Protein ID:NP_083093Link to BLAST:NP_083093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028778.2 720 Q9CZW4 720 100% 0 0
NP_083093.2 720 Q9CZW4 720 100% 0 0

Chromosomal Locations for CCDS 15087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78681633 78682010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78688237 78688414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78690269 78690378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78692082 78692220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78694196 78694346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78696081 78696204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78696429 78696500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78696890 78697029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78698996 78699168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78699756 78699830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78701269 78701460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78703486 78703600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78705234 78705391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78706258 78706415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGAATAACCACGTATCTTCAACACCATCAACCATGAAGCTAAAACAAACCATCAACCCCATACTTTTAT
ATTTCATACATTTTATAATATCACTCTATACTATTTTAACATACATCCCATTTTATTTTTTGTGTGAGTC
AAAACAAGAGAAACCAAACCAAATTAAAGCAAAACCTGTCAGTTCCAAACCGGACTCTGCATACAGATCT
ATCAACAGTGTGGATGGCTTGGCTTCAGTGCTGTATCCTGGCTGCGATACACTTGATAAAGTCTTTATGT
ATGCAAAAAACAAATTTAAAAACAAAAGACTATTGGGAACACGTGAAATTTTAAATGAGGAAGATGAAAT
ACAGCCAAATGGAAAAATTTTTAAAAAGGTTATTCTGGGGCACTATAATTGGCTTTCCTATGAAGATGTC
TTCATCCGAGCCCTTGACTTTGGAAATGGGTTACAAATGTTGGGCCAGAAACCAAAGGCCAACATCGCCA
TCTTCTGTGAGACCAGGGCTGAGTGGATGATCGCTGCACAGGCGTGTTTTATGTATAACTTCCAGCTTGT
TACACTGTATGCTACTCTGGGAGGTCCAGCCATTGTTCATGGACTGAATGAGACAGAGGTGACCAACATC
ATTACTAGCAAAGAACTCTTGCAAACAAAGCTGAAGGATATAGTCTCTTTGGTCCCACGTCTGCGGCATA
TCATTACTGTTGATGGGAAGCCTCCAACCTGGTCTGAGTTCCCCAAAGGTGTCATTGTACACACCATGGC
TGCAGTGCAGGCTCTAGGAGTGAAGGCCAACGTGGAAAAGAAAGCTCACAGCAAACCACTGCCCTCAGAT
ATTGCAGTAATCATGTACACAAGTGGGTCCACAGGAATTCCAAAGGGAGTCATGATCTCACACAGCAACA
TCATTGCTTCTATAACGGGGATGGCGAGAAGGATTCCAAGACTGGGAGAGGAAGATGTGTATATTGGCTA
CTTGCCCCTGGCACATGTTCTAGAATTAAGTGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGAATCGGC
TACTCTTCACCACAGACATTAGCAGATCAGTCTTCAAAAATAAAAAAAGGAAGCAAAGGAGACACATCCG
TGCTGAAGCCAACACTGATGGCAGCTGTTCCGGAAATCATGGATCGGATCTACAAAAATGTCATGAATAA
AGTGAATGAAATGAGTGCTTTTCAACGAAACTTGTTTATTTTGGCATATAATTATAAGATGGAACAGATT
TCAAAAGGGTGTAGTACTCCACTGTGTGACCGCTTTGTTTTCCGGAATGTCCGAAGGCTGCTGGGTGGAA
ATATTCGCCTTTTACTGTGTGGTGGTGCTCCGCTTTCTGCAACAACGCAGCGATTCATGAATATCTGTTT
CTGCTGTCCCGTTGGTCAGGGGTATGGACTCACAGAATCTACTGGGGCTGGAACAATTACAGAAGTGTGG
GACTACAATACCGGCAGAGTGGGAGCACCATTAGTTTGCTGTGAAATCAAATTAAAGAACTGGGAGGAAG
GTGGCTATTTTAATACTGACAAACCACATCCCAGAGGTGAAATTCTTATTGGTGGCCAAAATGTGACAAT
GGGGTACTACAAAAATGAAGCAAAAACAAAGACAGATTTCTTTGAAGATGAAAATGGACAGCGGTGGCTG
TGCACTGGAGATATTGGAGAGTTTGACCCTGACGGCTGTCTGAAGATCATTGACCGTAAAAAGGACCTTG
TGAAACTACAGGCAGGAGAGTACGTTTCTCTCGGGAAAGTAGAGGCAGCTTTGAAGAACCTCCCACTGAT
AGATAACATTTGTGCGTATGCAAACAGCTACCATTCTTACGTAATTGGGTTTGTTGTGCCAAATCAAAAG
GAACTTACAGAGCTAGCTAGAACAAAAGGATTTAAAGGAACTTGGGAAGAGCTGTGTAACAGCAGCGAGA
TGGAAAATGAGGTCCTTAAAGTGCTTTCTGAAGCTGCTATTTCAGCAAGTCTGGAAAAGTTTGAAATTCC
ACTAAAAATACGTTTGAGCCCTGACCCATGGACTCCCGAAACTGGTCTGGTGACAGATGCCTTCAAGTTG
AAACGTAAAGAGCTTAAAACACACTACCAGGCAGACATTGAGCGGATGTATGGAAGAAAATAA

Translation (720 aa):
MNNHVSSTPSTMKLKQTINPILLYFIHFIISLYTILTYIPFYFLCESKQEKPNQIKAKPVSSKPDSAYRS
INSVDGLASVLYPGCDTLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDV
FIRALDFGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNI
ITSKELLQTKLKDIVSLVPRLRHIITVDGKPPTWSEFPKGVIVHTMAAVQALGVKANVEKKAHSKPLPSD
IAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIG
YSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQI
SKGCSTPLCDRFVFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVW
DYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFFEDENGQRWL
CTGDIGEFDPDGCLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANSYHSYVIGFVVPNQK
ELTELARTKGFKGTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKL
KRKELKTHYQADIERMYGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH