NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15077.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15077.2 Public Mus musculus 1 Obsl1 23 108 98 CCDS HistoryNCBI Gene:98733Re-query CCDS DB by CCDS ID:15077.2Re-query CCDS DB by GeneID:98733See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15077.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15077.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113567.8 ENSMUSP00000109197.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113567.8Link to Ensembl Protein Viewer:ENSMUSP00000109197.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113567Re-query CCDS DB by Protein ID:ENSMUSP00000109197
Original member NCBI NM_178884.5 NP_849215.3 Updated not alive Link to Nucleotide Sequence:NM_178884.5Link to Protein Sequence:NP_849215.3Re-query CCDS DB by Nucleotide ID:NM_178884Re-query CCDS DB by Protein ID:NP_849215
Current member NCBI NM_178884.6 NP_849215.4 Accepted alive Link to Nucleotide Sequence:NM_178884.6Link to Protein Sequence:NP_849215.4Re-query CCDS DB by Nucleotide ID:NM_178884Re-query CCDS DB by Protein ID:NP_849215Link to BLAST:NP_849215.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849215.4 1804 D3YYU8-1 1804 99.9446% 0 1

Chromosomal Locations for CCDS 15077.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75485952 75485959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75486640 75486909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75487223 75487327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75487629 75487790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75487906 75488062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75488589 75488701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75489483 75489749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75490796 75491068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75491188 75491457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75492506 75492793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75492870 75493145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75493785 75494057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75497008 75497280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75498075 75498347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75499902 75500174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75501959 75502255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75502913 75503215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75503367 75503618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75503697 75503966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75505213 75506224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5415 nt):
ATGAAGGCCGGATCAGGGGATCAGGGGAGCCCCCCGTGTTTCCTACGCTTCCCGCGGCCCGTGCGGGTGG
TAAGTGGAGCGGAGGCCGAGCTCAAATGCGTGGTCCTGGGAGAGCCGCCGCCCACTGTCGTGTGGGAGAA
AGGCGGGCAGCAGCTGGTGGCCTCCGAGCGCCTAAGCTTTCCGGAGGACGGCGCCGAGCACGGCCTGCTG
CTGAGCGGCGCGCTGCCCACCGACGCCGGGGTCTACGTGTGCCGCGCCCGCAACGCGGCCGGAGAGGCCT
ACGCGGCGGCCGCCGTCACCGTGCTGGAACCCCCGGCCCCCGAGCCGGAGCCCGAGTCCTCCGAGTGTCC
GCTGCCAACACCGGGCACCGGGGAGGGCGCCCCGAAGTTCCTGACGGGGCCCCAGTCCCAGTGGGTGCTG
CGAGGGGAGGAGGTGGTGCTGACGTGCCAGGTGGGAGGCCTTCCGGAGCCCAAGCTGTACTGGGAGAAGG
ATGGGATGGCCTTGGACGAAGTATGGGACAGCAGCCACTTCAAGCTGGAGCCCGGCCGCGGCGCGAGTGA
CGAGGGCGCGAGCCTGACGTTGCGCATCCTGGCGGCACGGCTGCCCGATTCCGGGGTGTACGTGTGTCAC
GCCCGCAACGCGCACGGCCACGCGCAGGCGGGCGCGCTGCTCCAGGTGCACCAGCCCCGCGAGAGCCCGC
CCCAGGATCCCGATGAGAACCCCAAACCCGTGTTGGAGCCGCTCAAAGGCGCGCCCAAGACCTTCTGGGT
GAACGAGGGCAAGCACGCCAAATTCCGCTGCTACGTGATGGGCAAACCTGAGCCCGAGATCGAATGGCAC
TTGGAGGGCCGCCCTCTGCTCCCCGATCGCCGCCGCCTCATGTACCGCGACCGCGACGGCGGCTTTGTAC
TTAAGGTGCTCTACTGCCAGGCCAAGGACCGTGGGCTCTACGTGTGCGCGGCGCGCAACTCGGCGGGCCA
GACCCTAAGCGCGGTCCAGCTGCACGTGAAAGAACCCCGCCTACGGTTCACCCGGCCCCTGCAGGATGTG
GAGGGTCGGGAACACGGGATTGTGGTGCTGGAGTGTAAAGTACCTAACTCTCGAATTCCCACCGCCTGGT
TCCGGGAGGACCAACGGCTGTTACCCTGCCGCAAGTACGAGCAGATCGAGGAGGGCGCTGTGAGACGCCT
CGTCATCCACAAGCTGAAGGCCGATGATGATGGCGTCTATCTGTGCGAGATGCGGGGCCGAGTGCGCACT
GTGGCCAATGTGACGGTCAAAGGACCCATCCTGAAGCGTTTACCCCGGAAGCTTGACGTCCTGGAAGGAG
AGAACGCAGTACTGCTGGTGGAGACTCAAGAAGCTGGGGTGCAGGGGTGCTGGAGCCGTGATGGGGAGGA
CCTGCCAGACACCTGCCAGAGCAGTTGTGGTCATATGCATGCCCTGGTCCTTCCAGGGGTGACCCGAGAA
GATGCTGGAGAGATCACCTTCAGCCTGGGCAACTCCCGTACCACCACCCTGCTCAGAGTCAAATGTGTCA
AGCACAGTCCTCCCGGGCCCCCCGTAATGGTTGAGATGTTCAAAGGCCAAAAGAACAAGGTTCTGCTGAC
CTGGAAGCCCCCAGAGCCACCTCCAGAGACCTCCTTCATCTACCGCCTAGAGCGGCAGGAAGTGGGGTCT
GACGATTGGATCCAGTGCTTCAGCATTGAGAAGGCGGGAGCCGTAGAGGTGCCCGGGGACTGTGTACCCA
CCGAGGGTGACTATCACTTCCGCATCTGCACAGTCAGTGAACATGGCCGCAGTCCCCATGTCGTGTTCAA
CGGTTCTGCTCACCTTGTGCCCACAGCTCGCCTGGTGTCAGGCCTGGAAGACGTGCAGGTATATGATGGG
GAAGATGCCGTCTTCTCCCTTGATCTGTCCGCCATCATCCAGGGCTCTTGGTTCCTTAATGGAGAGCAGC
TCCAGAGTAATGAGCCAGAGGGCCAGGTGGAGCCTGGAGCCCTGCGGTACCGCATAGAGCAGAAGGGCCT
CCAGCACAGGCTCATCCTGCAAGCTGTCAAGCACCGGGACAGTGGGGCCCTGGTTGGCTTCAGCTGCCCT
GGTGTGCAAGACTCTGCTGCCCTCACTATCCAAGAAAGCTCAGTGCACATCCTGAGTCCCCAGGACAAGG
TGTCACTGACCTTCACGACCTCTGAACGGGTAGTGCTGACCTGTGAGCTCTCAAGGGTGGATTTTCCTGC
AACCTGGTACAAGGATGGGCAGAAGGTGGAGGAGAGCGAGTCGCTCATAGTGAAGACAGAGGGCCGCAAA
CACCGACTGATCCTGCCTGAGGCTCAAGTCCGAGACAGCGGTGAATTTGAGTGCAGAACGGAAGGGGTCT
CGGCCTTCTTTGGAGTCACTGTTCAAGATCCCCCAGTGCACATCGTGAACCCCCAAGAGCATGTGTTTGT
CCATGCCATCACCTCCGAGTGTGTCAGGCTGACCTGTGAGGTAGACCGAGAGGACACAACTGTACACTGG
TACAAGGATGGGCAGGAGGTGGAGGAGAGTGACATCATCGTATTAGAAAATAAAGGGCCCCATCACCGCC
TGGTGCTACCTGCAGCCCGGCCCTCCGACGGGGGCGAGTTCCAGTGTGTCGCAGGAGATGAACGTGCCTA
CTTCACAGTTACCATCACAGATGTCTTCTCGTGGATCGTCTACCCCAGTAGCGAAGTGCATGTGGCAGCC
GTACGCCTAGAGCGTGTGGTGCTGACCTGTGAGCTGTGCCGACCCTGGGCTGAGGTGCGCTGGACCAAAG
ATGGGGAGGAGGTAGTGGAGAGCCCAGCACTGCTCCTGGAGAAGGAAGACACCATCCGCCGCCTGGTGCT
GCCCTCTGTCCAGCTTGAGGATTCTGGCGAGTACCTGTGTGAAATCCATGATGAGTCGGCTTCCTTCACC
ATCACCGTCACAGAGCCCCCTGTGCGGATCATATACCCCCAGGACGAGGTGACCTTACACGCCGTGAGTT
TGGAATGTGTGGTGCTCACCTGTGAGCTGTCTAGAGAGGATGCTCCTGTACGCTGGTACAAGGATGGGTT
AGAGGTGGAGGAGAGTGAAGCCCTGGTGCTCCAGAGCGATGGGCCTCGTCGCCGTCTGGTGTTGCCTGCT
GCCCAGCCAGAGGACGGGGGCGAGTTTGTGTGTGATGCTGGGGATGATTCAGCCTTCTTCACTGTCACTG
TCACAGCTCCACCAGAAAGGATTGTGCACCCAGCGGCCCGATCCCTGGATTTGCAGTTTGGGGCTCCAGG
ACACGTGGAGCTACGCTGCGAAGTGGCCCCGGCTGGGTCTCAGGTGCGCTGGTACAAGGATGGCCTAGAG
GTAGAGGTGTCAGATGCGCTGCAGCTGGGTGCTGAGGGGCCTGCCCGCACTCTCACCCTGCCCCACGCCC
AGCCTGAGGATGCCGGGGAGTATGTATGTGAGACCCGAGATGAGGCTGTCACCTTCAACGTCAGCCTGGC
TGAGCTTCCGGTGCAGTTTCTGGCTCCAGAGGCAGCCCCAAATCCGCTCTGCGTGGTTCCTGGGGAGCCC
GTGGTGCTGAGCTGTGAGCTGTCCCGAGCAAGCGCACAAGTGTTCTGGAGCCACAATGGGAGCCCGGTGC
AGCAGGGTGAAGGACTAGAGCTGCGAGCTGAGGGTCCTCGCAGAATCCTCTGCATCCAGGCAGCAGACCT
CGCTCACACAGGTGTCTACACTTGCCAATCTGGGGCATCCCCAGGGGCCCCAAGCCTCAGCTTCAATGTC
CAGGTGGCTGAGCTCCCGCCAGTGAAGCTGGTCTCTGAACTGACGCCTCTGACAGTCCATGAGGGGGACG
ATGCCACATTCCAGTGTGAGGTTTCACCACCAGATGCCGAAGTCACCTGGCTACGCAACGGAGCGGTTAT
CACTGCAGGGCCACAGTTGGAAATGGTCCAGAATGGTTCAAGCCGCACCTTGATCATCCGAGGCTGCCAA
CTCAAAGACGCAGGGACCGTGACCGCGCGAGCCGGAGCTGCTGACACAAGTGCCAGGCTCCACGTTCGAG
AGACAGAGCTGCTGTTCTTGCGGCGGCTGCAGGATGTGCGGGCCGAGGAAGGCCAGGATGTGCACCTTGA
GGTAGAGACAGGCCGAGTTGGTGCAGCTGGAACTGTTCGCTGGATACGAGGTGGGGAACCTCTTCCCCTG
GACTCTCGCCTGACCACGGCTCAGGATGGCCATGTCCACCGCCTCTCTATCCATGGCGTTCTACTTACCG
ACCAGGGCACCTACGGCTGTGAGAGCCGCCACGATCGCACCCTGGCCAGGCTCAGTGTGAGGCCTCGGCA
GCTGAGGGAACTTCGGCCTCTGGAGGATGTGACCGTCCATGAGGGGGGCAGTGCCACCTTCCAGCTGGAG
CTGTCCCAGGAGGGTGTGACCGGAGAGTGGGCCCAGGGTGGAGTCCGGCTGCACCCAGGGCCCAAGTGCC
ACATTCAATCAGAAGGCCGCACTCACCGCTTGGTGCTAAGCGGCCTGGGTCTGGCTGACTCGGGCTGTGT
CTCCTTCACTGCGGACACCCTTCGGTGTGCTGCTCGGCTCACAGTGAGAGAGGTCCCAGTGACTATTGTG
CAGGGGCCACAGGACCTAGAAGTGACTGAAGGTGACACAGCCACGTTCGAGTGCGAGCTTTCCCAGACTT
TGGCTGACGTAATATGGGAGAAGGATGGGCAGGCGCTCTCTCTCAGCCCACGCCTCCGGCTCCAGGCTCT
CGGCACGCGCCGCCTTCTGCTTCTGCGGCGTTGCTGCTCCTCAGACGCCGGGACCTACAGCTGCGTTGTG
GGGACAGCTCGCTCCGAGCCTGCGCGCTTGACCGTACGCGAACGAGAGGTGTCTGTACTCCGTGAACTCC
GGTCCGTTAGTGCCCGCGAAGGAGACGGCGCCACGTTTGAGTGCACTGTGTCGGAGACCGAGATCACCGG
GCGCTGGGAGCTCGGAGGCCGCGCGCTGAGACCCGGAGGCCGCGTCCGCATCCGACAGGAAGGGAAGAAA
CACATTCTGGTGCTGAGCGAGCTGAGAACCGAGGACACCGGAGAAGTCTGCTTCCAGGCGGGACCCGCCC
AGTCCTTGGCTCGGCTGGAGGTGGAGGCGTTGCCTCTCCAGATGTGCCGCCGCCCACCTCGTGAGAAGAC
GGTTCTGGTCAACCGCAGGGCGGTGTTGGAGGTGACTGTGTCCCGCCCTGGGGGCCACGTGTGTTGGATG
CGGGAGGGGGTCGAACTCTGCCCGGGAAACAAGTATGAGACGCGTAGACACGGCACCACCCACAGCCTAG
TCATCCATGACGTCCGACCTGAGGACCAGGGCACCTACAGCTGCCAAGCAGGCCAGGACAGTGCTGACAC
ACAGCTGCTGGTAGATGGTGACTAG

Translation (1804 aa):
MKAGSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPTVVWEKGGQQLVASERLSFPEDGAEHGLL
LSGALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPAPEPEPESSECPLPTPGTGEGAPKFLTGPQSQWVL
RGEEVVLTCQVGGLPEPKLYWEKDGMALDEVWDSSHFKLEPGRGASDEGASLTLRILAARLPDSGVYVCH
ARNAHGHAQAGALLQVHQPRESPPQDPDENPKPVLEPLKGAPKTFWVNEGKHAKFRCYVMGKPEPEIEWH
LEGRPLLPDRRRLMYRDRDGGFVLKVLYCQAKDRGLYVCAARNSAGQTLSAVQLHVKEPRLRFTRPLQDV
EGREHGIVVLECKVPNSRIPTAWFREDQRLLPCRKYEQIEEGAVRRLVIHKLKADDDGVYLCEMRGRVRT
VANVTVKGPILKRLPRKLDVLEGENAVLLVETQEAGVQGCWSRDGEDLPDTCQSSCGHMHALVLPGVTRE
DAGEITFSLGNSRTTTLLRVKCVKHSPPGPPVMVEMFKGQKNKVLLTWKPPEPPPETSFIYRLERQEVGS
DDWIQCFSIEKAGAVEVPGDCVPTEGDYHFRICTVSEHGRSPHVVFNGSAHLVPTARLVSGLEDVQVYDG
EDAVFSLDLSAIIQGSWFLNGEQLQSNEPEGQVEPGALRYRIEQKGLQHRLILQAVKHRDSGALVGFSCP
GVQDSAALTIQESSVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESESLIVKTEGRK
HRLILPEAQVRDSGEFECRTEGVSAFFGVTVQDPPVHIVNPQEHVFVHAITSECVRLTCEVDREDTTVHW
YKDGQEVEESDIIVLENKGPHHRLVLPAARPSDGGEFQCVAGDERAYFTVTITDVFSWIVYPSSEVHVAA
VRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLEKEDTIRRLVLPSVQLEDSGEYLCEIHDESASFT
ITVTEPPVRIIYPQDEVTLHAVSLECVVLTCELSREDAPVRWYKDGLEVEESEALVLQSDGPRRRLVLPA
AQPEDGGEFVCDAGDDSAFFTVTVTAPPERIVHPAARSLDLQFGAPGHVELRCEVAPAGSQVRWYKDGLE
VEVSDALQLGAEGPARTLTLPHAQPEDAGEYVCETRDEAVTFNVSLAELPVQFLAPEAAPNPLCVVPGEP
VVLSCELSRASAQVFWSHNGSPVQQGEGLELRAEGPRRILCIQAADLAHTGVYTCQSGASPGAPSLSFNV
QVAELPPVKLVSELTPLTVHEGDDATFQCEVSPPDAEVTWLRNGAVITAGPQLEMVQNGSSRTLIIRGCQ
LKDAGTVTARAGAADTSARLHVRETELLFLRRLQDVRAEEGQDVHLEVETGRVGAAGTVRWIRGGEPLPL
DSRLTTAQDGHVHRLSIHGVLLTDQGTYGCESRHDRTLARLSVRPRQLRELRPLEDVTVHEGGSATFQLE
LSQEGVTGEWAQGGVRLHPGPKCHIQSEGRTHRLVLSGLGLADSGCVSFTADTLRCAARLTVREVPVTIV
QGPQDLEVTEGDTATFECELSQTLADVIWEKDGQALSLSPRLRLQALGTRRLLLLRRCCSSDAGTYSCVV
GTARSEPARLTVREREVSVLRELRSVSAREGDGATFECTVSETEITGRWELGGRALRPGGRVRIRQEGKK
HILVLSELRTEDTGEVCFQAGPAQSLARLEVEALPLQMCRRPPREKTVLVNRRAVLEVTVSRPGGHVCWM
REGVELCPGNKYETRRHGTTHSLVIHDVRPEDQGTYSCQAGQDSADTQLLVDGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH