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Report for CCDS15033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15033.1 Public Mus musculus 1 Tmem169 23 108 98 CCDS HistoryNCBI Gene:271711Re-query CCDS DB by CCDS ID:15033.1Re-query CCDS DB by GeneID:271711See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027380.11 ENSMUSP00000027380.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027380.11Link to Ensembl Protein Viewer:ENSMUSP00000027380.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027380Re-query CCDS DB by Protein ID:ENSMUSP00000027380
Original member NCBI NM_175564.4 NP_780773.1 Updated not alive Link to Nucleotide Sequence:NM_175564.4Link to Protein Sequence:NP_780773.1Re-query CCDS DB by Nucleotide ID:NM_175564Re-query CCDS DB by Protein ID:NP_780773
Current member NCBI NM_175564.5 NP_780773.1 Accepted alive Link to Nucleotide Sequence:NM_175564.5Link to Protein Sequence:NP_780773.1Re-query CCDS DB by Nucleotide ID:NM_175564Re-query CCDS DB by Protein ID:NP_780773Link to BLAST:NP_780773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780773.1 297 Q8BG50 297 100% 0 0

Chromosomal Locations for CCDS 15033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 72297908 72298178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 72300684 72301306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGAAGAGTCGGCACCGGTGGAAAGTCAGGGTCAGCTCCCAAGCCCCCACCACGGCTCACTGAGGAGGG
CAGTGGCTGCTGTCCTGGCCCTGGATGGGGAATCCACATTGGGCCGCAGGAAGAAGAGGAGGAAAGACTC
CCGCCCGGAATCCATCATCATCTACCGGTCAGATAATGAGAAGACGGATGAGGAGCCTGAAGAATCTGAA
GGTGGAGATCGGCCTAAAGAGGAAGAGGGGGAGGACTTCCTGGACTATCCTGGGGATGATGGTGTGTGGA
ACATGCCTCTGGACAGCCGCTATGTCACACTAACCGGGACCATCACACGAGGGAAGAAGAAGGGTCAGAT
GGTGGATATCCATGTCACTCTGACAGAGAAGGAGCTGCAGGAGCTGACCAAACCCAAGGAGCTGTCCAGG
GAAGCAGCCCCCGAGGGAAGGAGGGCCTGCCAGGTCGGGGCGGACCAGGGGCCACACGTGGTCCTCTGGA
CACTGGTCTGCCTGCCTGTGGTCTTTGTGCTCTCTTTCGTTGTGTCTTTCTATTATGGCACCATCACCTG
GTACAACATCTTTCTGGTGTACAATGAAGAGAGGACCTTCTGGCATAAGATCTCCTGCTGTCCGTGCCTC
ATTCTCTTCTACCCAGTGCTCATCATGACCATGGCCTCTTCCCTGGGGCTCTATGCCGCCGTGGCTCAGC
TCTCATGGTCCTGGGCAGCGTGGTGGCGAGCTGCCTGTGACATGGAGAAAGGCTTCTGTGGTTGGCTCTG
CAGCAAGCTGGGTCTGGAGGACTGTTCTCCCTACAGCATTGTGGAACTGCTGGAGTCTGATAATATCTCG
GGCAATCTCTCCAACAAGGACCCCATCCAGGAGGTAGAAACCTCTACTGTCTAG

Translation (297 aa):
MEESAPVESQGQLPSPHHGSLRRAVAAVLALDGESTLGRRKKRRKDSRPESIIIYRSDNEKTDEEPEESE
GGDRPKEEEGEDFLDYPGDDGVWNMPLDSRYVTLTGTITRGKKKGQMVDIHVTLTEKELQELTKPKELSR
EAAPEGRRACQVGADQGPHVVLWTLVCLPVVFVLSFVVSFYYGTITWYNIFLVYNEERTFWHKISCCPCL
ILFYPVLIMTMASSLGLYAAVAQLSWSWAAWWRAACDMEKGFCGWLCSKLGLEDCSPYSIVELLESDNIS
GNLSNKDPIQEVETSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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