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Report for CCDS14963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14963.1 Public Mus musculus 1 Mars2 23 108 98 CCDS HistoryNCBI Gene:212679Re-query CCDS DB by CCDS ID:14963.1Re-query CCDS DB by GeneID:212679See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061334.9 ENSMUSP00000049770.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061334.9Link to Ensembl Protein Viewer:ENSMUSP00000049770.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061334Re-query CCDS DB by Protein ID:ENSMUSP00000049770
Original member Current member NCBI NM_175439.3 NP_780648.1 Accepted alive Link to Nucleotide Sequence:NM_175439.3Link to Protein Sequence:NP_780648.1Re-query CCDS DB by Nucleotide ID:NM_175439Re-query CCDS DB by Protein ID:NP_780648Link to BLAST:NP_780648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780648.1 586 Q499X9 586 100% 0 0

Chromosomal Locations for CCDS 14963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 55237240 55239000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGCTGCGGCAGTGTGCTCGCTGGGTGTTGACGCGCACCCGGTTCGGCCGCGGCTGTCGCCGCTACGGTT
CGTGCTCGCCGAGCGCTAGTGGCGACGCCGGGGAAGCGCGGGCCTACTTCACCACACCTATCTTCTACGT
GAACGCCGCGCCGCACATCGGGCACCTGTACTCGGCGCTACTGGCCGACGCCCTGTGCCGCCACCGTCGT
CTCCGAGTTCCCGGCTCTGCGTCCACGCGGTTTTCCACCGGCACGGATGAGCACGGCCTGAAGATCCAGC
AGGCGGCAGCCACCGCCGGCTTGGCCCCGATCGAGCTGTGCGATCGAGTGTCTGCCCAGTTTTTGCAGCT
TTTCCGGGAGGCTGACATCTCTTCCACGGACTTCATCCGCACCACGGAGGCTCGGCACCGAGTAGCGGTG
CAGCATTTCTGGGGTGTGCTGGAGGCCCGGGGTCTGCTTTACAAAGGGATCTATGAAGGGTGGTATTGTG
CCTCGGATGAGTGCTTCTTGCCGGAGGCCAAGGTTACTCGGCAGGTGGGTCCGTCCGGGGATCCCTGTCC
CGTGTCTCTCGAGAGCGGACATCCTGTCTCCTGGACGAAGGAAGAAAATTACATTTTCAAGCTTTCTCAG
TTTCGAGAACCACTCCAGCGGTGGCTTGGAAACAATCCTCAGGCAATCACACCGGAACCGTTCCACCAGG
CAGTTCTTCAGTGGCTGGAGGAGGAGCTGCCCGACTTGTCCGTTTCTCGAAGGAGTAGCCATCTGCACTG
GGGCATACCAGTTCCCGGGGACGACTCGCAGACCATCTACGTGTGGCTGGATGCCCTGGTCAACTACCTC
ACTGTAGTTGGCTACCCAGATGCAGATTTCAAGTCTTGGTGGCCAGCCACCTCTCATATCATAGGTAAGG
ACATTCTCAAATTTCATGCTATTTATTGGCCTGCCCTTCTCCTAGGGGCAGGATTGAGGCCACCACATCG
CATCTATGTCCACTCGCACTGGACGGTGAGTGGCCAAAAAATGTCCAAAAGCTTGGGCAACGTGGTGGAT
CCCAGGACTTGCCTTGATCGCTATACTGTGGATGGCTTTCGCTACTTTCTCCTTCGGCAGGGCGTTCCCA
ATTGGGACTGCGATTACTATGATGAAAAGGTGGTTAAATTGCTGGACTCCGAGCTGGCAGATGCCTTAGG
AGGGCTTTTAAACCGGTGCACTGCCTACAGAATAAATCCTTCTGGAACCTACCCATCTTTCTGTGCTGCC
TGTTTCCCCAGTGAGCCAGGGTTAACGGGGCCGTCAGTTCGTGTGCAGGCAGAAGACTATGCGCTTGTAA
CTGCAGTGGCCACTTTACCCAAACTGGTAGCGGGCTATTATAATGACTTTCAGATCTATAAGGCTCTGGA
GGCGGTATCCAGCTGTGTTCGGCAAACTAATGGTTTCGTCCAAAGGCACGCACCATGGAAATTGAACTGG
GAGAGCCCTGAGGATGCTCCCTGGCTGGGTACCGTGCTTCACGTAGCCTTGGAGTGCTTGCGAGTGTTTG
GAACTTTGCTTCAGCCTGTTACTCCAAACTTAGCAGATAAACTGCTGTCAAGACTGGGAGTCTCTACCAC
AGAGAGAGGCCTTGGAGAGCTCTACTTCCTACCTCGATTCTATGGACACCCATGCCCCTTTGAGGGGAGA
AAGTTGGGACCTGACACTGGGCTTTTGTTTCCTAGACTGGACCAATCTAGGACTCGGCTAGTGAAAGCCC
ACAGGACCTAG

Translation (586 aa):
MLRQCARWVLTRTRFGRGCRRYGSCSPSASGDAGEARAYFTTPIFYVNAAPHIGHLYSALLADALCRHRR
LRVPGSASTRFSTGTDEHGLKIQQAAATAGLAPIELCDRVSAQFLQLFREADISSTDFIRTTEARHRVAV
QHFWGVLEARGLLYKGIYEGWYCASDECFLPEAKVTRQVGPSGDPCPVSLESGHPVSWTKEENYIFKLSQ
FREPLQRWLGNNPQAITPEPFHQAVLQWLEEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYL
TVVGYPDADFKSWWPATSHIIGKDILKFHAIYWPALLLGAGLRPPHRIYVHSHWTVSGQKMSKSLGNVVD
PRTCLDRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLDSELADALGGLLNRCTAYRINPSGTYPSFCAA
CFPSEPGLTGPSVRVQAEDYALVTAVATLPKLVAGYYNDFQIYKALEAVSSCVRQTNGFVQRHAPWKLNW
ESPEDAPWLGTVLHVALECLRVFGTLLQPVTPNLADKLLSRLGVSTTERGLGELYFLPRFYGHPCPFEGR
KLGPDTGLLFPRLDQSRTRLVKAHRT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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