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Report for CCDS14851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14851.1 Public Mus musculus 1 Smap1 23 108 98 CCDS HistoryNCBI Gene:98366Re-query CCDS DB by CCDS ID:14851.1Re-query CCDS DB by GeneID:98366See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027339.13 ENSMUSP00000027339.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027339.13Link to Ensembl Protein Viewer:ENSMUSP00000027339.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027339Re-query CCDS DB by Protein ID:ENSMUSP00000027339
Original member NCBI NM_028534.3 NP_082810.1 Updated not alive Link to Nucleotide Sequence:NM_028534.3Link to Protein Sequence:NP_082810.1Re-query CCDS DB by Nucleotide ID:NM_028534Re-query CCDS DB by Protein ID:NP_082810
Current member NCBI NM_028534.4 NP_082810.1 Accepted alive Link to Nucleotide Sequence:NM_028534.4Link to Protein Sequence:NP_082810.1Re-query CCDS DB by Nucleotide ID:NM_028534Re-query CCDS DB by Protein ID:NP_082810Link to BLAST:NP_082810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082810.1 440 Q91VZ6 440 100% 0 0

Chromosomal Locations for CCDS 14851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23846429 23846563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23848264 23848571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23849303 23849468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23853423 23853550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23859023 23859113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23866217 23866297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23876374 23876449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23877709 23877794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23891860 23891993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23922038 23922155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGCGACACGCTCCTGTCGGGAGAAGGCTCAGAAGCTGAACGAGCAGCACCAGCTCATCCTGTCCAAAC
TGCTGAGGGAGGAGGACAACAAGTACTGCGCCGACTGCGAGGCCAAAGGTCCCCGATGGGCTTCCTGGAA
TATTGGTGTGTTTATTTGCATCAGATGTGCTGGAATTCATAGAAATCTTGGGGTTCATATATCCAGAGTC
AAGTCAGTCAACCTAGACCAATGGACACCAGAACAGATACAGTGCATGCAAGATATGGGAAATACTAAAG
CAAGACTACTTTATGAAGCCAATCTTCCAGAGAACTTTCGAAGACCACAGACAGATCAAGCAGTAGAGTT
TTTCATCAGAGATAAATATGAAAAGAAGAAATACTATGATAAAAATGCAATAGCTATCACAAATAAAGAA
AAGGAAAAAAAAAAGGACGAGAAAAAGAGAGAAAAGGAGCCAGAAAAGCCTGCAAAACCACTAACAACGG
AAAAGCTGCCGAAGAAAGAAGAGCAACAACTTGAGCCTAAGAAAAGCACCAGCCCAAAAAATGCTGCAGA
GCCCACTATTGATCTTCTAGGACTTGATGGTCCTGCTGAGGCACCCGTGACCAATGGAAACCCAGCCACA
GCGCCAGCCCTGAGTGATGATCTGGACATTTTTGGACCAATGATTTCTAACCCTTTACCTGCAGCTGTCA
TGCCCCCGGCTCAGGGGACTGCCTCCGTACCAGCACCTGCTACCCTGTCTACCGTTACATCTGGGGACCT
GGATCTGTTTACTGAGCAAACTACAAAGTCAGAAGAAGTAGCAAAGAAACAACTCTCCAAAGACTCCATC
TTATCTCTGTATGGTACAGGAGCACAGCAAAGCACTCCTGGTGTGTTTATGGGACCCACAAATATACCAT
TTACCTCACAAGCACCGACTGCATTTCAAGGTTTTCCTTCCATGGGCGTCCCAGTGCCTGCAGCTCCCGG
TCTTATAGGAAATATGATGGGACAGAATACTGGCATGATGGTGGGCATGCCCATGCACAATGGGTTCATG
GGAAACGCACAGACTGGAGTGATGCCACTTCCTCAGAATGTTGTTGGCCCTCAGGGAGGAATGGTGGGAC
AAATGGGTGCACCACAGAGTAAGTTCGGCTTGCCACAAGCCCAGCAGCCTCAGTGGAACCTCTCACAGAT
GAATCAGCAGATGGCTGCCATGAACCTCAGTAGTGCTAACGCTAGTGCAGGTTTTGGCCAGCCTCCCAGC
ACGACAGCAGGGTGGTCTGGAAGCTCATCGGGGCAGACGCTGAGCACACAGCTGTGGAAGTAA

Translation (440 aa):
MATRSCREKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRV
KSVNLDQWTPEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAITNKE
KEKKKDEKKREKEPEKPAKPLTTEKLPKKEEQQLEPKKSTSPKNAAEPTIDLLGLDGPAEAPVTNGNPAT
APALSDDLDIFGPMISNPLPAAVMPPAQGTASVPAPATLSTVTSGDLDLFTEQTTKSEEVAKKQLSKDSI
LSLYGTGAQQSTPGVFMGPTNIPFTSQAPTAFQGFPSMGVPVPAAPGLIGNMMGQNTGMMVGMPMHNGFM
GNAQTGVMPLPQNVVGPQGGMVGQMGAPQSKFGLPQAQQPQWNLSQMNQQMAAMNLSSANASAGFGQPPS
TTAGWSGSSSGQTLSTQLWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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