NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14850.1 Public Mus musculus 1 B3gat2 23 108 98 CCDS HistoryNCBI Gene:280645Re-query CCDS DB by CCDS ID:14850.1Re-query CCDS DB by GeneID:280645See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063663.5 ENSMUSP00000066582.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063663.5Link to Ensembl Protein Viewer:ENSMUSP00000066582.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000063663Re-query CCDS DB by Protein ID:ENSMUSP00000066582
Original member Current member NCBI NM_172124.2 NP_742122.2 Accepted alive Link to Nucleotide Sequence:NM_172124.2Link to Protein Sequence:NP_742122.2Re-query CCDS DB by Nucleotide ID:NM_172124Re-query CCDS DB by Protein ID:NP_742122Link to BLAST:NP_742122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742122.2 324 P59270-1 324 100% 0 0

Chromosomal Locations for CCDS 14850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23762635 23763228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23815221 23815365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23844873 23845021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23845101 23845187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGAAGTCCGCGCTGTGCAGCCGCTTCTTCATCCTCCTGCCCTGGATCCTGATTGTCATCATCATGTTGG
ACGTGGACCCCCGCAGGCCCGCGCCCCAACTCACTTCCCGTCCCTACTTCTCTCCCCATGCAGTGGGCTG
CGGGGGCTCCCGAGTCCCGCTCCGACGGAGTAGCCCCGGGCGTGACGCTGCCGAGAAGCGGAACGAGTCT
CGGCCTCAGCTGCAGCCGGAGCCGCGCTTGCCCACCATCTATGCCATCACACCCACCTACAGTCGCCCGG
TGCAGAAAGCCGAGCTCACTCGCCTGGCCAACACCTTCCGCCAGGTGGCGCAGTTGCACTGGATCCTGGT
GGAGGACCGGGCGACGCGCAGCGAGCTGGTGAGCAGCTTCCTAGCTCGGGCCGGCCTGCCCAACACGCAC
CTGCATGTGCCCACGCCGCGGCGCTACAAGCGACCGTGGCTGCCGCGCGCCACCGAACAGCGCAACGCGG
GCCTCGCCTGGCTGCGCCAGAGGCATCAGCATCAGAGCGCGCAACCCGGCGTGCTCTTCTTCGCCGACGA
TGACAACACGTACAGTCTGGAGCTCTTCCAGGAGATGAGGACCACTCGCAAGGTTTCTGTCTGGCCTGTG
GGACTAGTTGGTGGGCGACGCTATGAACGTCCGTTGGTAAAAAATGGCAAAGTTGTTGGCTGGTACACCG
GATGGAGAGAAGACAGGCCTTTTGCCATTGACATGGCTGGGTTTGCTGTGAGTCTGCAAGTCATCTTGTC
CAATCCGAAAGCTGTATTTAAGCGCCGTGGATCCCAGCCAGGGATGCAAGAATCTGACTTTCTAAAGCAG
ATAACAACAGTTGAAGAACTGGAACCAAAAGCTAGTAACTGCACCAAGGTTCTCGTGTGGCACACTCGGA
CAGAGAAGGTCAATCTAGCCAATGAGCCAAAGTATCACCTGGACACAGTGAACATTGAGGTGTAG

Translation (324 aa):
MKSALCSRFFILLPWILIVIIMLDVDPRRPAPQLTSRPYFSPHAVGCGGSRVPLRRSSPGRDAAEKRNES
RPQLQPEPRLPTIYAITPTYSRPVQKAELTRLANTFRQVAQLHWILVEDRATRSELVSSFLARAGLPNTH
LHVPTPRRYKRPWLPRATEQRNAGLAWLRQRHQHQSAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPV
GLVGGRRYERPLVKNGKVVGWYTGWREDRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQ
ITTVEELEPKASNCTKVLVWHTRTEKVNLANEPKYHLDTVNIEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH