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Report for CCDS14833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14833.1 Public Mus musculus 1 Jph1 23 108 98 CCDS HistoryNCBI Gene:57339Re-query CCDS DB by CCDS ID:14833.1Re-query CCDS DB by GeneID:57339See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038382.4 ENSMUSP00000039072.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038382.4Link to Ensembl Protein Viewer:ENSMUSP00000039072.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038382Re-query CCDS DB by Protein ID:ENSMUSP00000039072
Original member Current member NCBI NM_020604.2 NP_065629.1 Accepted alive Link to Nucleotide Sequence:NM_020604.2Link to Protein Sequence:NP_065629.1Re-query CCDS DB by Nucleotide ID:NM_020604Re-query CCDS DB by Protein ID:NP_065629Link to BLAST:NP_065629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065629.1 660 Q9ET80 660 100% 0 0

Chromosomal Locations for CCDS 14833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16997479 16997559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17003891 17004534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17016039 17016157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17091298 17092057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17097226 17097604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGACGGGCGGAAGGTTCGACTTCGACGATGGCGGCACCTACTGCGGCGGCTGGGAGGAGGGCAAGGCGC
ACGGGCATGGCATCTGCACGGGGCCCAAGGGCCAGGGCGAGTACTCTGGCTCCTGGTCGCACGGCTTCGA
GGTGGTTGGAGTCTACACCTGGCCCAGCGGCAACACCTACCAGGGCTACTGGGCGCAGGGCAAGCGGCAC
GGGCTGGGGGTGGAGACGAAGGGCAAGTGGATGTACCGGGGGGAGTGGTCACATGGTTTCAAGGGGCGCT
ACGGGGTCCGGCAGAGCTTGTGCACCCCCGCCCGCTACGAGGGGACCTGGAGTAACGGGCTGCAGGACGG
GTACGGCGTGGAGACCTACGGGGATGGAGGTACCTACCAGGGCCAGTGGGCTGGAGGCATGCGGCATGGC
TACGGTGTCCGCCAGAGTGTGCCCTATGGCATGGCCACAGTGATCCGTTCCCCGCTGCGCACTTCCCTGG
CCTCGCTGCGCAGTGAGCAGAGCAACGGCAGCGTGCTGCATGAAGCTGCAGCCGCAGCTGCAGACAGCCC
GGCTGGAACAAGAGGTGGCTTCGTGCTCAACTTCCATGCGGACACGGAACTGGGCAAGAAGAAGGGCGGC
CTCTTCCGTCGGGGTTCCCTTCTCGGCAGCATGAAACTCCGCAAGTCCGAATCCAAGTCTTCCATCTCCA
GCAAGCGCAGCTCGGTCCGCAGTGATGCAGCCATGAGCAGAATCAGTTCTAGCGATGCCAACTCCACCAT
CAGCTTTGGTGACGTCGACTGTGATTTTTGCCCCGTGGAAGATCACGTGGATGCCACTACCACGGAAACC
TACATGGGCGAGTGGAAGAACGATAAGCGCAATGGCTTCGGCATCAGCGAACGCTCCAATGGCATGAAGT
ACGAAGGCGAGTGGGCCAATAACAAGAGGCATGGGTACGGCTGCACTGTGTTTCCTGATGGCTCCAAAGA
AGAGGGAAAATACAAAAATAATATCCTGGTCCGTGGGATAAGGAAGCAGCTTATACCAATAAGAAATACA
AAAACTAGAGAGAAGGTGGATAGAGCAATTGAAGGTGCACAAAGGGCGGCAGCCATGGCCAGAACCAAAG
TGGAAATAGCAAACTCAAGGACTGCACATGCCAGAGCAAAAGCTGATGCTGCCGACCAAGCTGCACTGGC
TGCTCGCCAGGAGTGCGACATAGCAAGAGCTGTGGCCAGAGAGCTGTCACCTGATTTCTACCAACCAGGC
CCCGATTATATCAAACAAAGATGTCAGGAAGGGGGAGATATTAAAGAAAATCCAGAAGAAAAGGTCCTAG
AAAAGCCTCCGTCACCAAAGGAATCTCCTCATTTTTATCGCAAAGGCACCACACCCCCCAGGTCTCCTGA
GTCAAGTCCCAAACAGAGCCACTCTCCCCAGCCTTCCTCCCCAGAGCCCTCAAAGAAACAAAACCCCAGC
CCAGGGGCAAGACTCAGTCAAGATAAACAGAGCCTAGCTGAGGAACAAGTGACAGCCTTTGTCAATAAAC
CCTCTATGTCAAAGGCTCCCGCAAAAGAATTGGGAGCATCTGTGTCCAAGTACTCTGGCCGCCACCATGT
CCCCAACCCCAGCAACGGGGAGCTGCACTCTCAGTATCACGGCTACTATGTGAAACTGAACACACCCCAG
CATCCTCCAGAAGACAGGGAGGATGACAGAGGAGTCAGCCAGTCTTCCTCAGCATTGGTACCTAGACCAT
CACCTAACAAGTGGGGTCCCCCTAAATCTGTGACAAAACCAGTTGCCAAAGAAAGCAAAACTGAGCCAAA
AGCAAAGAAGTCTGAACTTGCTATACCAAAGAATCCAGCAAGCAATGATACCTGCCCTTCCTTGGAAAAA
GAAGCCAACTCTGGCCCTAATTCCATCATGATTGTCCTGGTCATGCTGTTGAATATTGGGTTGGCCATTC
TTTTTGTTCACTTTCTGACTTGA

Translation (660 aa):
MTGGRFDFDDGGTYCGGWEEGKAHGHGICTGPKGQGEYSGSWSHGFEVVGVYTWPSGNTYQGYWAQGKRH
GLGVETKGKWMYRGEWSHGFKGRYGVRQSLCTPARYEGTWSNGLQDGYGVETYGDGGTYQGQWAGGMRHG
YGVRQSVPYGMATVIRSPLRTSLASLRSEQSNGSVLHEAAAAAADSPAGTRGGFVLNFHADTELGKKKGG
LFRRGSLLGSMKLRKSESKSSISSKRSSVRSDAAMSRISSSDANSTISFGDVDCDFCPVEDHVDATTTET
YMGEWKNDKRNGFGISERSNGMKYEGEWANNKRHGYGCTVFPDGSKEEGKYKNNILVRGIRKQLIPIRNT
KTREKVDRAIEGAQRAAAMARTKVEIANSRTAHARAKADAADQAALAARQECDIARAVARELSPDFYQPG
PDYIKQRCQEGGDIKENPEEKVLEKPPSPKESPHFYRKGTTPPRSPESSPKQSHSPQPSSPEPSKKQNPS
PGARLSQDKQSLAEEQVTAFVNKPSMSKAPAKELGASVSKYSGRHHVPNPSNGELHSQYHGYYVKLNTPQ
HPPEDREDDRGVSQSSSALVPRPSPNKWGPPKSVTKPVAKESKTEPKAKKSELAIPKNPASNDTCPSLEK
EANSGPNSIMIVLVMLLNIGLAILFVHFLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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