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Report for CCDS14288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14288.1 Public Homo sapiens X SSX5 24 110 108 CCDS HistoryNCBI Gene:6758Re-query CCDS DB by CCDS ID:14288.1Re-query CCDS DB by GeneID:6758See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311798.5 ENSP00000312415.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311798.5Link to Ensembl Protein Viewer:ENSP00000312415.1Re-query CCDS DB by Nucleotide ID:ENST00000311798Re-query CCDS DB by Protein ID:ENSP00000312415
Original member Current member NCBI NM_021015.4 NP_066295.3 Accepted alive Link to Nucleotide Sequence:NM_021015.4Link to Protein Sequence:NP_066295.3Re-query CCDS DB by Nucleotide ID:NM_021015Re-query CCDS DB by Protein ID:NP_066295Link to BLAST:NP_066295.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066295.3 229 O60225-2 229 100% 0 0

Chromosomal Locations for CCDS 14288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48187631 48187731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48190133 48190268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48192232 48192281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48194129 48194224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48194740 48194854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48195007 48195129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48195290 48195358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGAACGGAGACGATGCCTTTGTACGGAGACCTAGGGTTGGTTCTCAAATACCAGAGAAGATGCAAAAGC
ATCCCTGGAGACAAGTCTGTGACCGTGGAATACATTTGGTGAATCTCAGTCCGTTCTGGAAGGTGGGAAG
AGAGCCAGCCAGCAGCATTAAAGCTCTACTGTGTGGCAGGGGAGAAGCTAGGGCCTTCGATGATATTGCC
AAATACTTCTCTGAGAAAGAGTGGGAAAAGATGAAAGCCTCGGAGAAAATCATCTATGTGTATATGAAGA
GAAAGTATGAGGCCATGACTAAACTAGGTTTCAAGGCCACCCTCCCACCTTTCATGCGTAATAAACGGGT
CGCAGACTTCCAGGGGAATGATTTTGATAATGACCCTAACCGTGGGAATCAGGTTGAACATCCTCAGATG
ACTTTCGGCAGGCTCCAGGGAATCTTCCCGAAGATCACGCCCGAGAAGCCAGCAGAGGAAGGAAATGATT
CGAAGGGAGTGCCAGAAGCATCTGGCCCACAGAACAATGGGAAACAGCTGCGCCCCTCAGGAAAACTAAA
TACCTCTGAGAAGGTTAACAAGACATCTGGACCCAAAAGGGGGAAACATGCCTGGACCCACAGAGTGCGT
GAGAGAAAGCAACTGGTGATTTATGAAGAGATCAGCGACCCTCAGGAAGATGACGAGTAA

Translation (229 aa):
MNGDDAFVRRPRVGSQIPEKMQKHPWRQVCDRGIHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIA
KYFSEKEWEKMKASEKIIYVYMKRKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQM
TFGRLQGIFPKITPEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVR
ERKQLVIYEEISDPQEDDE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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