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Report for CCDS14248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14248.1 Public Homo sapiens X TSPAN7 24 110 108 CCDS HistoryNCBI Gene:7102Re-query CCDS DB by CCDS ID:14248.1Re-query CCDS DB by GeneID:7102See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378482.7 ENSP00000367743.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378482.7Link to Ensembl Protein Viewer:ENSP00000367743.2Re-query CCDS DB by Nucleotide ID:ENST00000378482Re-query CCDS DB by Protein ID:ENSP00000367743
Original member Current member NCBI NM_004615.4 NP_004606.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004615.4Link to Protein Sequence:NP_004606.2Re-query CCDS DB by Nucleotide ID:NM_004615Re-query CCDS DB by Protein ID:NP_004606Link to BLAST:NP_004606.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004606.2 249 P41732 249 100% 0 0

Chromosomal Locations for CCDS 14248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38561547 38561627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38666121 38666309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38671376 38671450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38674221 38674316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38675705 38675860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38681204 38681287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38687599 38687667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGCATCGAGGAGAATGGAGACCAAACCTGTGATAACCTGTCTCAAAACCCTCCTCATCATCTACTCCT
TCGTCTTCTGGATCACTGGGGTGATCCTGCTGGCTGTTGGAGTCTGGGGCAAACTTACTCTGGGCACCTA
TATCTCCCTTATTGCCGAGAACTCCACAAATGCTCCCTATGTGCTCATCGGAACTGGCACCACTATTGTT
GTCTTTGGCCTGTTTGGATGCTTTGCTACATGTCGTGGTAGCCCATGGATGCTGAAACTGTATGCCATGT
TTCTGTCCCTGGTGTTCCTGGCTGAGCTCGTAGCTGGCATTTCAGGGTTTGTGTTTCGTCATGAGATCAA
GGACACCTTCCTGAGGACTTACACGGACGCTATGCAGACTTACAATGGCAATGATGAGAGGAGCCGGGCA
GTGGACCATGTGCAGCGCAGCCTGAGCTGCTGTGGTGTGCAGAACTACACCAACTGGAGCACCAGCCCCT
ACTTCCTGGAGCATGGCATCCCCCCCAGCTGCTGCATGAACGAAACTGATTGTAATCCCCAGGATCTACA
CAATCTGACTGTGGCCGCCACCAAAGTTAACCAGAAGGGTTGTTATGATCTGGTAACTAGTTTCATGGAG
ACTAACATGGGAATCATCGCTGGAGTGGCGTTTGGAATCGCATTCTCCCAGTTAATTGGCATGCTGCTGG
CCTGCTGTCTGTCCCGGTTCATCACGGCCAATCAGTATGAGATGGTGTAA

Translation (249 aa):
MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIV
VFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGNDERSRA
VDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFME
TNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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