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Report for CCDS14240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14240.1 Public Homo sapiens X LANCL3 24 110 108 CCDS HistoryNCBI Gene:347404Re-query CCDS DB by CCDS ID:14240.1Re-query CCDS DB by GeneID:347404See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378621.7 ENSP00000367885.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378621.7Link to Ensembl Protein Viewer:ENSP00000367885.3Re-query CCDS DB by Nucleotide ID:ENST00000378621Re-query CCDS DB by Protein ID:ENSP00000367885
Original member Current member EBI ENST00000614025.4 ENSP00000479231.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614025.4Link to Ensembl Protein Viewer:ENSP00000479231.1Re-query CCDS DB by Nucleotide ID:ENST00000614025Re-query CCDS DB by Protein ID:ENSP00000479231
Original member Current member NCBI NM_198511.3 NP_940913.1 Accepted alive Link to Nucleotide Sequence:NM_198511.3Link to Protein Sequence:NP_940913.1Re-query CCDS DB by Nucleotide ID:NM_198511Re-query CCDS DB by Protein ID:NP_940913Link to BLAST:NP_940913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940913.1 388 Q6ZV70-2 388 100% 0 0

Chromosomal Locations for CCDS 14240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37571871 37572443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37655688 37655811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37659462 37659659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37667282 37667489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37668368 37668431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGACACCAAGCGCTGCTTCGCCAATCGCTTCGATGACTACCAGGGCAGCCTGCTGGCGGGCCAGTGTG
AG
GAGGCGGTGGCGCCCTTGGTCACCGCCACCATCGAGCGCATCCTCCAGGAGCTTCCCCCACTCGGGGG
C
GGCGCGGAGGCCCGAGGGGCGACGGCGGGGGCTAGCGCCTGCCAGGGGGGGCTTTATGGCGGCGTGGCC
GGA
GTGGCGTATATGCTCTACCACGTCTCGCAGAGCCCGCTTTTCGCCACGGCCCGGGAACGCTACCTGC
GC
TCGGCTAAGCGCCTCATCGACGCGTGCGCCCGCGCTGAGGAGTGGGGCGAACCGGACGCCGACACCCG
C
GCCGCCTTCCTGCTCGGGGGCGCGGGCGTGTACGCCGTGGCCACGCTCGTATACCACGCCCTGGGCCGG
TCC
GACTACGTGCAGCCGCTGGGCAAGTTCCGGGCTCTGTGTGCCGTCTGCGCGCCGGTCTCCTTCCTGG
AG
TGCGGCTCCGACGAGCTGTTCGTGGGCCGCGCGGGTTACCTGTGTGCCGCGCTGGTGCTCAAGCAGAA
A
CTCGCCCAGGAGGTGCTGACTCCAGCACAGATCAAGTCAATTTGTCAGGCAATTCTGGACTCTGGGAAG
CAG
TATGCCATAAAGAAGAGGAAACCATTCCCCCTGATGTATTCTTACTATGGAACCGAATACTTGGGGG
CA
GCTCACGGCTTGTCGTCTATTCTTCAGATGCTTCTTTCTTACCATGAGCATCTCAAGCCCTCAGATCG
G
GAATTGGTATGGCAGAGCGTGGACTTTCTCATGGAACAGGAACAAAACTGCAACTGGCCACCTGAGCTC
GGC
GAGACCATCGAGAGAGAGAATGAGCTGGTGCACTGGTGCCATGGCGCTCCAGGAATTGCCTATCTGT
TT
GCCAAAGCTTATCTGGTTTCCAAGAAACCGCAGTACCTGGACACATGTATTCGGTGTGGGGAACTCAC
A
TGGCAGAAAGGCCTGCTAAAGAAGGGGCCTGGGATTTGCCATGGAGTAGCCGGCAGTGCCTATGTCTTC
CTG
CTGCTGTACCGGCTCACGGGAAACTCTAAATACATCTACCGAGCTCAAAGTTCATTCCCTGTAAACT
TG
ATAAAGATGGAACATCTGCTGTATACCAGACAACATTGCTTTTAA


Translation (388 aa):
MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTATIERILQELPPLGGGAEARGATAGASACQGGLYGGVA
G
VAYMLYHVSQSPLFATARERYLRSAKRLIDACARAEEWGEPDADTRAAFLLGGAGVYAVATLVYHALGR
S
DYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLCAALVLKQKLAQE
VLTPAQIKSICQAILDSGK
Q
YAIKKRKPFPLMYSYYGTEYL
GAAHGLSSILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPEL
G
ETIERENELVHWCHGAP
GIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVF
L
LLYRLTGNSKYIYRAQ
SSFPVNLIKMEHLLYTRQHCF



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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