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Report for CCDS14002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14002.1 Public Homo sapiens 22 SGSM3 24 110 108 CCDS HistoryNCBI Gene:27352Re-query CCDS DB by CCDS ID:14002.1Re-query CCDS DB by GeneID:27352See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14002.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248929.14 ENSP00000248929.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248929.14Link to Ensembl Protein Viewer:ENSP00000248929.8Re-query CCDS DB by Nucleotide ID:ENST00000248929Re-query CCDS DB by Protein ID:ENSP00000248929
Original member Current member NCBI NM_015705.6 NP_056520.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015705.6Link to Protein Sequence:NP_056520.2Re-query CCDS DB by Nucleotide ID:NM_015705Re-query CCDS DB by Protein ID:NP_056520Link to BLAST:NP_056520.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056520.2 749 Q96HU1-1 749 100% 0 0

Chromosomal Locations for CCDS 14002.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40400807 40400813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40401593 40401675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40402139 40402205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40404247 40404455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40404557 40404664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40405141 40405284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40405649 40405844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40406078 40406223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40406438 40406662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407017 40407071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407201 40407328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407413 40407568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40407789 40407843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408071 40408120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408277 40408429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408627 40408697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408794 40408842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40408933 40409018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40409250 40409372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40409465 40409525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40409682 40409759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGTCAGGAAGCCATACACCTGCCTGTGGCCCTTTCTCAGCCCTGACTCCGAGCATATGGCCCCAGGAGA
TCTTGGCCAAGTACACGCAGAAGGAAGAGTCAGCAGAGCAACCAGAGTTCTACTACGATGAGTTTGGTTT
CCGTGTGTACAAGGAAGAAGGTGATGAGCCTGGCTCCAGTCTGCTGGCGAACTCCCCTCTGATGGAGGAT
GCTCCACAGAGGCTGCGGTGGCAGGCCCACCTGGAGTTCACCCATAACCACGATGTGGGGGATCTCACCT
GGGACAAGATTGCCGTCTCCCTACCCCGCTCTGAGAAGCTCCGCTCCCTGGTGCTGGCCGGCATCCCACA
TGGCATGAGGCCACAGCTGTGGATGCGGCTCTCTGGGGCCCTGCAGAAGAAGAGGAACTCTGAGCTGTCC
TACCGCGAGATTGTGAAGAACAGCTCCAACGATGAGACCATCGCTGCCAAGCAGATCGAGAAGGACCTGC
TCCGCACCATGCCCAGCAACGCCTGCTTCGCCAGCATGGGTAGCATCGGGGTGCCCCGCCTGCGCAGGGT
GCTCCGGGCCCTGGCCTGGCTCTACCCAGAGATCGGCTACTGCCAGGGCACCGGCATGGTGGCCGCCTGC
CTCCTGCTGTTCCTGGAGGAGGAGGACGCCTTCTGGATGATGTCTGCCATCATCGAGGACCTGCTCCCCG
CCTCCTACTTCAGCACCACCCTGCTGGGTGTCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCA
GTACCTGCCTCGCCTGGACAAGCTGCTCCAGGAGCATGACATTGAGCTGTCCCTGATCACACTGCACTGG
TTCCTCACGGCCTTCGCCAGCGTGGTGGACATCAAGCTGCTCCTGCGCATCTGGGACCTGTTTTTCTACG
AGGGCTCCCGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCTCAAGGAGGAAGAGCTGATCCAGTC
AGAGAACTCGGCCTCCATCTTCAACACGCTATCGGATATCCCGTCGCAGATGGAGGACGCGGAGCTGCTT
CTGGGGGTGGCCATGCGGCTGGCCGGCTCCCTCACCGATGTGGCCGTGGAGACTCAGCGCCGCAAGCACC
TGGCCTATCTCATTGCAGACCAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTCTCAGGTTGT
TCGCCGCAGGACCCAGCGGAGGAAGTCCACCATCACTGCTCTGCTCTTCGGGGAGGATGACCTGGAGGCA
CTCAAGGCCAAGAACATCAAGCAGACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGTGGCAC
GCCACTTCCAGTGCACAGACCCCAAAAACTGCAGCGTGGAGCTGACTCCAGACTATAGCATGGAGAGCCA
CCAGCGGGACCACGAGAACTACGTGGCGTGCTCACGCAGCCACCGGCGCCGAGCCAAGGCCCTGCTGGAC
TTTGAGCGGCACGACGACGACGAGCTGGGCTTCCGCAAGAACGACATCATCACAATCGTGTCTCAGAAGG
ACGAGCACTGCTGGGTGGGGGAGCTCAACGGCCTGCGAGGCTGGTTTCCAGCCAAGTTCGTGGAAGTCCT
GGATGAGCGCAGCAAAGAGTACTCCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCACAGACCTCGTG
CGAGGGACCCTCTGCCCGGCCCTTAAGGCCCTGTTCGAACATGGACTGAAGAAGCCATCCCTGCTTGGGG
GCGCCTGCCACCCCTGGCTGTTTATCGAGGAGGCTGCAGGCCGGGAGGTCGAGAGAGACTTTGCCTCCGT
GTATTCCCGTCTGGTGCTCTGTAAGACCTTCAGGTTGGATGAAGATGGCAAAGTCCTGACCCCGGAGGAG
CTGCTCTACCGGGCTGTGCAGTCTGTGAACGTGACCCACGATGCAGTGCATGCACAAATGGATGTGAAGC
TCCGCTCACTGATCTGCGTGGGGCTCAATGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGCTCCAG
CCTGCCCACCGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCGGGCTGGGTCCAGATCAAG
TGTGAGCTCCGAGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCTGCGAAGAGAG
AGGCGCAGCAGCCCCTGAAGGAGGGCGTCCGGGACATGCTGGTGAAGCACCACCTCTTCAGCTGGGATGT
GGACGGGTGA

Translation (749 aa):
MSGSHTPACGPFSALTPSIWPQEILAKYTQKEESAEQPEFYYDEFGFRVYKEEGDEPGSSLLANSPLMED
APQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMRPQLWMRLSGALQKKRNSELS
YREIVKNSSNDETIAAKQIEKDLLRTMPSNACFASMGSIGVPRLRRVLRALAWLYPEIGYCQGTGMVAAC
LLLFLEEEDAFWMMSAIIEDLLPASYFSTTLLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHW
FLTAFASVVDIKLLLRIWDLFFYEGSRVLFQLTLGMLHLKEEELIQSENSASIFNTLSDIPSQMEDAELL
LGVAMRLAGSLTDVAVETQRRKHLAYLIADQGQLLGAGTLTNLSQVVRRRTQRRKSTITALLFGEDDLEA
LKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACSRSHRRRAKALLD
FERHDDDELGFRKNDIITIVSQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAGDDSVTEGVTDLV
RGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREVERDFASVYSRLVLCKTFRLDEDGKVLTPEE
LLYRAVQSVNVTHDAVHAQMDVKLRSLICVGLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIK
CELRVLCCFAFSLSQDWELPAKREAQQPLKEGVRDMLVKHHLFSWDVDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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