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Report for CCDS13719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13719.1 Public Homo sapiens 21 POFUT2 24 110 108 CCDS HistoryNCBI Gene:23275Re-query CCDS DB by CCDS ID:13719.1Re-query CCDS DB by GeneID:23275See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13719.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349485.10 ENSP00000339613.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000349485.10Link to Ensembl Protein Viewer:ENSP00000339613.5Re-query CCDS DB by Nucleotide ID:ENST00000349485Re-query CCDS DB by Protein ID:ENSP00000339613
Original member Current member NCBI NM_133635.6 NP_598368.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133635.6Link to Protein Sequence:NP_598368.2Re-query CCDS DB by Nucleotide ID:NM_133635Re-query CCDS DB by Protein ID:NP_598368Link to BLAST:NP_598368.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598368.2 429 Q9Y2G5-3 429 100% 0 0

Chromosomal Locations for CCDS 13719.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 45265482 45265635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45267590 45267713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45269839 45270019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45277017 45277142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45278103 45278169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45282349 45282459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45283383 45283527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45285678 45285928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 45287741 45287871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCGACACTCAGCTTCGTCTTCCTGCTGCTGGGGGCAGTGTCCTGGCCTCCGGCTTCTGCCTCCGGCC
AGGAGTTCTGGCCCGGACAATCGGCGGCCGATATTCTGTCGGGGGCGGCTTCCCGCAGACGGTATCTTCT
GTATGACGTCAACCCCCCGGAAGGCTTCAACCTGCGCAGGGATGTCTATATCCGAATCGCCTCTCTCCTG
AAGACTCTGCTGAAGACGGAGGAGTGGGTGCTTGTCCTGCCTCCATGGGGCCGCCTCTATCACTGGCAGA
GTCCTGACATCCACCAGGTCCGGATTCCCTGGTCTGAGTTTTTTGATCTTCCAAGTCTCAATAAAAACAT
CCCCGTCATCGAGTATGAGCAGTTCATCGCAGAATCTGGTGGGCCCTTTATTGACCAGGTTTACGTCCTG
CAAAGTTACGCAGAGGGGTGGAAAGAAGGGACCTGGGAAGAGAAGGTGGACGAGCGGCCGTGTATTGATC
AGCTCCTGTACTCCCAGGACAAGCACGAGTACTACAGAGGATGGTTTTGGGGTTATGAGGAGACCAGGGG
TCTAAACGTCTCCTGTCTGTCCGTCCAGGGCTCAGCCTCCATCGTGGCGCCCCTGCTGCTGAGAAACACA
TCAGCCCGGTCCGTGATGTTAGACAGAGCCGAGAACCTACTTCACGACCACTATGGAGGGAAAGAATACT
GGGATACCCGTCGCAGCATGGTGTTTGCCAGGCACCTGCGGGAGGTGGGAGACGAGTTCAGGAGCAGACA
TCTCAACTCCACGGACGACGCAGACAGGATCCCCTTCCAGGAGGACTGGATGAAGATGAAGGTCAAGCTG
GGCTCCGCGCTAGGGGGCCCCTACCTGGGAGTCCACCTGAGAAGAAAAGATTTCATCTGGGGTCACAGAC
AGGATGTACCCAGTCTGGAAGGGGCCGTGAGGAAGATCCGCAGCCTCATGAAGACCCACCGGCTGGACAA
GGTGTTTGTGGCCACAGATGCCGTCAGAAAGGAATATGAAGAGCTAAAAAAGCTGTTACCCGAGATGGTG
AGGTTTGAACCCACGTGGGAGGAGCTGGAGCTCTACAAGGACGGAGGCGTTGCGATTATTGACCAGTGGA
TCTGCGCACACGCCAGGTTTTTTATTGGCACCTCAGTCTCAACATTTTCTTTTCGGATTCATGAGGAAAG
AGAAATCCTGGGGTTGGACCCCAAGACGACGTACAACAGGTTCTGCGGAGACCAAGAGAAGGCGTGTGAG
CAACCCACCCACTGGAAGATCACCTACTGA

Translation (429 aa):
MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVYIRIASLL
KTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYEQFIAESGGPFIDQVYVL
QSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNT
SARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKVKL
GSALGGPYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKLLPEMV
RFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTTYNRFCGDQEKACE
QPTHWKITY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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