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Report for CCDS13718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13718.1 Public Homo sapiens 21 SLX9 24 110 108 CCDS HistoryNCBI Gene:85395Re-query CCDS DB by CCDS ID:13718.1Re-query CCDS DB by GeneID:85395See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291634.11 ENSP00000291634.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291634.11Link to Ensembl Protein Viewer:ENSP00000291634.6Re-query CCDS DB by Nucleotide ID:ENST00000291634Re-query CCDS DB by Protein ID:ENSP00000291634
Original member Current member NCBI NM_058190.4 NP_478070.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_058190.4Link to Protein Sequence:NP_478070.1Re-query CCDS DB by Nucleotide ID:NM_058190Re-query CCDS DB by Protein ID:NP_478070Link to BLAST:NP_478070.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_478070.1 230 Q9NSI2-1 230 100% 0 0

Chromosomal Locations for CCDS 13718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44940058 44940186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44943684 44943837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44960100 44960168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44967034 44967181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44973197 44973265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44976680 44976803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGGGAAAGTGAGGGGGTTGCGCGCCCGAGTGCACCAGGCTGCCGTGAGGCCGAAAGGGGAGGCCGCCC
CCGGCCCCGCGCCCCCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAGGACTGGGCGTT
CATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGAC
GTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTCCATCAGGA
GAGGTGCAGAGGCCAAGACCGTTTTGCCCAAGAAGGAGAAAATGAAGCTGAGGCGTGAGCAATGGTTGCA
GAAAATCGAAGCCATAAAACTGGCTGAGCAGAAGCACAGGGAGGAGCGGAGGCGGAGGGCCACGGTGGTG
GTGGGGGACCTGCACCCTCTCAGGGATGCCCTGCCCGAGCTGCTGGGGCTCGAGGCTGGCAGCCGGCGCC
AAGCCCGCAGCAGGGAGAGCAACAAGCCCCGGCCCTCAGAGCTCAGCCGGATGAGCGCAGCCCAGAGACA
GCAGCTTCTCGAGGAAGAAAGGACCCGGTTTCAGGAGCTGCTGGCCAGTCCGGCCTACAGAGCCAGCCCC
CTGGTGGCCATCGGGCAGACGCTGGCCCGGCAGATGCAGCTGGAAGATGGCGGCCAGCTCTGA

Translation (230 aa):
MGKVRGLRARVHQAAVRPKGEAAPGPAPPAPEATPPPASAAGKDWAFINTNIFARTKIDPSALVQKLELD
VRSVTSVRRGEAGSSARSVPSIRRGAEAKTVLPKKEKMKLRREQWLQKIEAIKLAEQKHREERRRRATVV
VGDLHPLRDALPELLGLEAGSRRQARSRESNKPRPSELSRMSAAQRQQLLEEERTRFQELLASPAYRASP
LVAIGQTLARQMQLEDGGQL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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