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Report for CCDS13526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13526.1 Public Homo sapiens 20 FNDC11 24 110 108 CCDS HistoryNCBI Gene:79025Re-query CCDS DB by CCDS ID:13526.1Re-query CCDS DB by GeneID:79025See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13526.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370097.2 ENSP00000359115.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370097.2Link to Ensembl Protein Viewer:ENSP00000359115.1Re-query CCDS DB by Nucleotide ID:ENST00000370097Re-query CCDS DB by Protein ID:ENSP00000359115
Original member Current member EBI ENST00000370098.4 ENSP00000359116.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370098.4Link to Ensembl Protein Viewer:ENSP00000359116.3Re-query CCDS DB by Nucleotide ID:ENST00000370098Re-query CCDS DB by Protein ID:ENSP00000359116
Original member Current member EBI ENST00000615526.1 ENSP00000480914.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615526.1Link to Ensembl Protein Viewer:ENSP00000480914.1Re-query CCDS DB by Nucleotide ID:ENST00000615526Re-query CCDS DB by Protein ID:ENSP00000480914
Original member Current member NCBI NM_001319152.2 NP_001306081.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001319152.2Link to Protein Sequence:NP_001306081.1Re-query CCDS DB by Nucleotide ID:NM_001319152Re-query CCDS DB by Protein ID:NP_001306081Link to BLAST:NP_001306081.1
Original member Current member NCBI NM_001319153.2 NP_001306082.1 Accepted alive Link to Nucleotide Sequence:NM_001319153.2Link to Protein Sequence:NP_001306082.1Re-query CCDS DB by Nucleotide ID:NM_001319153Re-query CCDS DB by Protein ID:NP_001306082Link to BLAST:NP_001306082.1
Original member Current member NCBI NM_024059.3 NP_076964.1 Accepted alive Link to Nucleotide Sequence:NM_024059.3Link to Protein Sequence:NP_076964.1Re-query CCDS DB by Nucleotide ID:NM_024059Re-query CCDS DB by Protein ID:NP_076964Link to BLAST:NP_076964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306081.1 318 Q9BVV2 318 100% 0 0
NP_001306082.1 318 Q9BVV2 318 100% 0 0
NP_076964.1 318 Q9BVV2 318 100% 0 0

Chromosomal Locations for CCDS 13526.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63555664 63556620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGAGCACCCATGTGGCAGGCCTGGGCCTGGACAAGATGAAGCTGGGCAATCCCCAGTCCTTCCTGGACC
AGGAGGAGGCAGATGACCAGCAGCTGCTGGAACCAGAGGCGTGGAAGACCTACACCGAGCGCCGCAATGC
CCTGCGTGAGTTCCTGACCTCGGACCTGAGTCCGCACCTGCTCAAGCGCCACCACGCCCGCATGCAGCTG
CTGCGTAAGTGCTCCTACTACATCGAGGTCCTGCCCAAGCACCTGGCCCTGGGCGACCAGAACCCGCTGG
TGCTGCCTAGCGCCTTGTTCCAGCTCATCGACCCCTGGAAGTTCCAGCGCATGAAGAAGGTGGGCACAGC
TCAGACCAAGATCCAGCTCCTGCTGCTCGGGGACCTGTTGGAACAGCTCGACCATGGCCGTGCTGAGCTG
GATGCCCTGCTCCGGTCGCCAGACCCACGGCCCTTCCTGGCCGACTGGGCGCTGGTGGAGCGGCGGCTGG
CGGACGTGTCGGCCGTCATGGACAGCTTCCTGACCATGATGGTGCCGGGGCGGCTACACGTCAAGCACCG
CCTGGTGTCTGATGTCAGTGCCACCAAGATCCCGCACATCTGGCTCATGCTGAGCACCAAGATGCCTGTC
GTGTTTGACCGAAAGGCGTCGGCGGCTCACCAGGACTGGGCCCGGCTGCGCTGGTTCGTCACCATCCAGC
CAGCCACATCGGAGCAGTATGAGTTGCGCTTCAGGCTGCTGGACCCGCGGACACAGCAGGAGTGCGCCCA
GTGTGGCGTCATCCCCGTGGCTGCCTGCACCTTCGACGTCCGAAACCTGCTGCCCAACCGATCCTATAAG
TTCACCATCAAGAGGGCCGAGACCTCCACGCTGGTGTACGAGCCCTGGAGGGACAGCCTCACCCTGCACA
CCAAGCCGGAGCCCCTGGAGGGGCCCGCCCTCAGCCACTCTGTCTGA

Translation (318 aa):
MSTHVAGLGLDKMKLGNPQSFLDQEEADDQQLLEPEAWKTYTERRNALREFLTSDLSPHLLKRHHARMQL
LRKCSYYIEVLPKHLALGDQNPLVLPSALFQLIDPWKFQRMKKVGTAQTKIQLLLLGDLLEQLDHGRAEL
DALLRSPDPRPFLADWALVERRLADVSAVMDSFLTMMVPGRLHVKHRLVSDVSATKIPHIWLMLSTKMPV
VFDRKASAAHQDWARLRWFVTIQPATSEQYELRFRLLDPRTQQECAQCGVIPVAACTFDVRNLLPNRSYK
FTIKRAETSTLVYEPWRDSLTLHTKPEPLEGPALSHSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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