NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13286.1 Public Homo sapiens 20 DSN1 24 110 108 CCDS HistoryNCBI Gene:79980Re-query CCDS DB by CCDS ID:13286.1Re-query CCDS DB by GeneID:79980See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373750.9 ENSP00000362855.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373750.9Link to Ensembl Protein Viewer:ENSP00000362855.4Re-query CCDS DB by Nucleotide ID:ENST00000373750Re-query CCDS DB by Protein ID:ENSP00000362855
Original member Current member EBI ENST00000426836.5 ENSP00000389810.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426836.5Link to Ensembl Protein Viewer:ENSP00000389810.1Re-query CCDS DB by Nucleotide ID:ENST00000426836Re-query CCDS DB by Protein ID:ENSP00000389810
Original member Current member NCBI NM_001145315.2 NP_001138787.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145315.2Link to Protein Sequence:NP_001138787.1Re-query CCDS DB by Nucleotide ID:NM_001145315Re-query CCDS DB by Protein ID:NP_001138787Link to BLAST:NP_001138787.1
Original member Current member NCBI NM_001145316.2 NP_001138788.1 Accepted alive Link to Nucleotide Sequence:NM_001145316.2Link to Protein Sequence:NP_001138788.1Re-query CCDS DB by Nucleotide ID:NM_001145316Re-query CCDS DB by Protein ID:NP_001138788Link to BLAST:NP_001138788.1
Original member Current member NCBI NM_024918.4 NP_079194.3 Accepted alive Link to Nucleotide Sequence:NM_024918.4Link to Protein Sequence:NP_079194.3Re-query CCDS DB by Nucleotide ID:NM_024918Re-query CCDS DB by Protein ID:NP_079194Link to BLAST:NP_079194.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138787.1 356 Q9H410-1 356 100% 0 0
NP_001138788.1 356 Q9H410-1 356 100% 0 0
NP_079194.3 356 Q9H410-1 356 100% 0 0

Chromosomal Locations for CCDS 13286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36752788 36752897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36754763 36754850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36755682 36755829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36758087 36758161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36758558 36758617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36762461 36762548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36766769 36766841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36767969 36768042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36770873 36771193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36771425 36771458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGACTTCAGTGACTAGATCAGAGATCATAGATGAAAAAGGACCAGTGATGTCTAAGACTCATGATCATC
AATTGGAATCAAGTCTCAGTCCTGTGGAAGTGTTTGCTAAAACATCTGCCTCCCTGGAGATGAATCAAGG
CGTTTCAGAGGAAAGAATTCACCTTGGCTCTAGCCCTAAAAAAGGGGGAAATTGTGATCTCAGCCACCAG
GAAAGACTTCAGTCGAAGTCCCTTCATTTGTCTCCTCAAGAACAATCTGCCAGTTATCAAGACAGGAGGC
AATCCTGGCGGCGAGCAAGTATGAAAGAAACGAACCGGCGGAAGTCGCTGCATCCCATTCACCAGGGCAT
CACAGAGCTCAGCCGGTCTATCAGTGTCGATTTAGCAGAAAGCAAACGGCTTGGCTGTCTCCTGCTTTCC
AGTTTCCAGTTCTCTATTCAGAAACTTGAACCTTTCCTAAGGGACACTAAGGGCTTCAGTCTTGAAAGTT
TTAGAGCCAAAGCATCTTCTCTTTCTGAAGAATTGAAACATTTTGCAGACGGACTGGAAACTGATGGAAC
TCTACAAAAATGTTTTGAAGATTCAAATGGAAAAGCATCAGATTTTTCTTTGGAAGCATCTGTGGCTGAG
ATGAAGGAATACATAACAAAGTTTTCTTTAGAACGTCAGACTTGGGATCAGCTCTTGCTTCACTACCAGC
AGGAGGCTAAAGAGATATTGTCCAGAGGATCAACTGAGGCCAAAATTACTGAGGTCAAAGTGGAACCTAT
GACATATCTTGGGTCTTCTCAGAATGAAGTTCTTAATACAAAACCTGACTACCAGAAAATATTACAGAAC
CAGAGCAAAGTCTTTGACTGTATGGAGTTGGTGATGGATGAACTGCAAGGATCAGTGAAACAGCTGCAGG
CCTTTATGGATGAAAGTACCCAGTGCTTCCAGAAGGTGTCAGTACAGCTCGGAAAGAGAAGCATGCAACA
ATTAGATCCCTCACCAGCTCGAAAACTGTTGAAGCTTCAGCTACAGAACCCACCTGCCATACATGGATCT
GGATCTGGATCTTGTCAGTGA

Translation (356 aa):
MTSVTRSEIIDEKGPVMSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPKKGGNCDLSHQ
ERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGITELSRSISVDLAESKRLGCLLLS
SFQFSIQKLEPFLRDTKGFSLESFRAKASSLSEELKHFADGLETDGTLQKCFEDSNGKASDFSLEASVAE
MKEYITKFSLERQTWDQLLLHYQQEAKEILSRGSTEAKITEVKVEPMTYLGSSQNEVLNTKPDYQKILQN
QSKVFDCMELVMDELQGSVKQLQAFMDESTQCFQKVSVQLGKRSMQQLDPSPARKLLKLQLQNPPAIHGS
GSGSCQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH