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Report for CCDS13211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13211.1 Public Homo sapiens 20 BPIFB6 24 110 108 CCDS HistoryNCBI Gene:128859Re-query CCDS DB by CCDS ID:13211.1Re-query CCDS DB by GeneID:128859See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349552.1 ENSP00000344929.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000349552.1Link to Ensembl Protein Viewer:ENSP00000344929.1Re-query CCDS DB by Nucleotide ID:ENST00000349552Re-query CCDS DB by Protein ID:ENSP00000344929
Original member Current member NCBI NM_174897.2 NP_777557.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174897.2Link to Protein Sequence:NP_777557.1Re-query CCDS DB by Nucleotide ID:NM_174897Re-query CCDS DB by Protein ID:NP_777557Link to BLAST:NP_777557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777557.1 453 Q8NFQ5 453 100% 0 0

Chromosomal Locations for CCDS 13211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 33031648 33031744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33032984 33033083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33034186 33034290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33034763 33034912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33035081 33035144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33035612 33035672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33036445 33036536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33037562 33037738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33038909 33038962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33039347 33039520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33040251 33040318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33041970 33042015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33042815 33042878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33043291 33043367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 33044015 33044047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGCTGCGGATCCTGTGCCTGGCACTCTGCAGCCTGCTGACTGGCACGCGAGCTGACCCTGGGGCACTGC
TGCGGTTGGGCATGGACATCATGAACCAGGTCCAGAGCGCCATGGATGAGAGTCATATCCTGGAGAAGAT
GGCAGCCGAGGCAGGCAAGAAACAGCCAGGGATGAAACCTATCAAGGGCATCACCAATTTGAAGGTGAAG
GATGTCCAGCTGCCCGTCATCACACTGAACTTTGTACCTGGAGTGGGCATCTTCCAATGTGTGTCCACAG
GCATGACCGTCACTGGCAAGAGCTTCATGGGAGGGAACATGGAGATCATCGTGGCCCTGAACATCACAGC
CACCAACCGGCTTCTGCGGGATGAGGAGACAGGCCTCCCCGTGTTCAAGAGTGAGGGCTGTGAGGTCATC
CTGGTCAATGTGAAGACTAACCTGCCTAGCAACATGCTCCCCAAGATGGTCAACAAGTTCCTGGACAGCA
CCCTGCACAAAGTCCTCCCTGGGCTGATGTGTCCCGCCATCGATGCAGTCCTGGTGTATGTGAACAGGAA
GTGGACCAACCTCAGTGACCCCATGCCTGTGGGCCAGATGGGCACCGTCAAATATGTTCTGATGTCCGCA
CCAGCCACCACAGCCAGCTACATCCAACTGGACTTCAGTCCTGTGGTGCAGCAGCAAAAGGGCAAAACCA
TCAAGCTTGCTGATGCCGGGGAGGCCCTCACGTTCCCTGAGGGTTATGCCAAAGGCTCGTCGCAGCTGCT
GCTCCCAGCCACCTTCCTCTCTGCAGAGCTTGCCCTTCTGCAGAAGTCCTTTCATGTGAATATCCAGGAT
ACAATGATTGGTGAGCTGCCCCCACAAACCACCAAGACCCTGGCTCGCTTCATTCCTGAAGTGGCTGTAG
CTTATCCCAAGTCAAAGCCCTTGACGACCCAGATCAAGATAAAGAAGCCTCCCAAGGTCACTATGAAGAC
AGGCAAGAGCCTGCTGCACCTCCACAGCACCCTGGAGATGTTCGCAGCTCGGTGGCGGAGCAAGGCTCCA
ATGTCCCTCTTTCTCCTAGAAGTGCACTTCAATCTGAAGGTCCAGTACTCAGTGCATGAGAACCAGCTGC
AGATGGCCACTTCTTTGGACAGATTACTGAGCTTGTCCCGGAAGTCCTCATCGATTGGCAACTTCAATGA
GAGGGAATTAACTGGCTTCATCACCAGCTATCTCGAAGAAGCCTACATCCCAGTTGTCAATGATGTGCTT
CAAGTGGGGCTCCCACTCCCGGACTTTCTGGCCATGAATTACAACCTGGCTGAGCTGGACATAGTAGAGA
ATGCCCTGATGCTGGACTTGAAGCTGGGCTGA

Translation (453 aa):
MLRILCLALCSLLTGTRADPGALLRLGMDIMNQVQSAMDESHILEKMAAEAGKKQPGMKPIKGITNLKVK
DVQLPVITLNFVPGVGIFQCVSTGMTVTGKSFMGGNMEIIVALNITATNRLLRDEETGLPVFKSEGCEVI
LVNVKTNLPSNMLPKMVNKFLDSTLHKVLPGLMCPAIDAVLVYVNRKWTNLSDPMPVGQMGTVKYVLMSA
PATTASYIQLDFSPVVQQQKGKTIKLADAGEALTFPEGYAKGSSQLLLPATFLSAELALLQKSFHVNIQD
TMIGELPPQTTKTLARFIPEVAVAYPKSKPLTTQIKIKKPPKVTMKTGKSLLHLHSTLEMFAARWRSKAP
MSLFLLEVHFNLKVQYSVHENQLQMATSLDRLLSLSRKSSSIGNFNERELTGFITSYLEEAYIPVVNDVL
QVGLPLPDFLAMNYNLAELDIVENALMLDLKLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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