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Report for CCDS13034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13034.1 Public Homo sapiens 20 C20orf141 24 110 108 CCDS HistoryNCBI Gene:128653Re-query CCDS DB by CCDS ID:13034.1Re-query CCDS DB by GeneID:128653See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13034.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380589.4 ENSP00000369963.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380589.4Link to Ensembl Protein Viewer:ENSP00000369963.3Re-query CCDS DB by Nucleotide ID:ENST00000380589Re-query CCDS DB by Protein ID:ENSP00000369963
Original member Current member EBI ENST00000603872.2 ENSP00000473907.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000603872.2Link to Ensembl Protein Viewer:ENSP00000473907.1Re-query CCDS DB by Nucleotide ID:ENST00000603872Re-query CCDS DB by Protein ID:ENSP00000473907
Original member Current member NCBI NM_001256538.2 NP_001243467.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256538.2Link to Protein Sequence:NP_001243467.1Re-query CCDS DB by Nucleotide ID:NM_001256538Re-query CCDS DB by Protein ID:NP_001243467Link to BLAST:NP_001243467.1
Original member Current member NCBI NM_080739.2 NP_542777.1 Accepted alive Link to Nucleotide Sequence:NM_080739.2Link to Protein Sequence:NP_542777.1Re-query CCDS DB by Nucleotide ID:NM_080739Re-query CCDS DB by Protein ID:NP_542777Link to BLAST:NP_542777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243467.1 165 Q9NUB4 165 100% 0 0
NP_542777.1 165 Q9NUB4 165 100% 0 0

Chromosomal Locations for CCDS 13034.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2815185 2815444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2815538 2815775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGACCCGGCTCTGCTTACCCAGACCCGAAGCACGTGAGGATCCGATCCCAGTTCCTCCAAGGGGCCTGG
GTGCTGGGGAGGGGTCAGGTAGTCCAGTGCGTCCACCTGTATCCACCTGGGGCCCTAGCTGGGCCCAGCT
CCTGGACAGTGTCCTATGGCTGGGGGCACTAGGACTGACAATCCAGGCAGTCTTTTCCACCACTGGCCCA
GCCCTGCTGCTGCTTCTGGTCAGCTTCCTCACCTTTGACCTGCTCCATAGGCCCGCAGGTCACACTCTGC
CACAGCGCAAACTTCTCACCAGGGGCCAGAGTCAGGGGGCCGGTGAAGGTCCTGGACAGCAGGAGGCTCT
ACTCCTGCAAATGGGTACAGTCTCAGGACAACTTAGCCTCCAGGACGCACTGCTGCTGCTGCTCATGGGG
CTGGGCCCGCTCCTGAGAGCCTGTGGCATGCCCTTGACCCTGCTTGGCCTGGCTTTCTGCCTCCATCCTT
GGGCCTGA

Translation (165 aa):
MTRLCLPRPEAREDPIPVPPRGLGAGEGSGSPVRPPVSTWGPSWAQLLDSVLWLGALGLTIQAVFSTTGP
ALLLLLVSFLTFDLLHRPAGHTLPQRKLLTRGQSQGAGEGPGQQEALLLQMGTVSGQLSLQDALLLLLMG
LGPLLRACGMPLTLLGLAFCLHPWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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