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Report for CCDS13028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13028.1 Public Homo sapiens 20 ZNF343 24 110 108 CCDS HistoryNCBI Gene:79175Re-query CCDS DB by CCDS ID:13028.1Re-query CCDS DB by GeneID:79175See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278772.9 ENSP00000278772.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278772.9Link to Ensembl Protein Viewer:ENSP00000278772.4Re-query CCDS DB by Nucleotide ID:ENST00000278772Re-query CCDS DB by Protein ID:ENSP00000278772
Original member Current member NCBI NM_001282495.1 NP_001269424.1 Accepted alive Link to Nucleotide Sequence:NM_001282495.1Link to Protein Sequence:NP_001269424.1Re-query CCDS DB by Nucleotide ID:NM_001282495Re-query CCDS DB by Protein ID:NP_001269424Link to BLAST:NP_001269424.1
Original member Current member NCBI NM_001282496.2 NP_001269425.1 Accepted alive Link to Nucleotide Sequence:NM_001282496.2Link to Protein Sequence:NP_001269425.1Re-query CCDS DB by Nucleotide ID:NM_001282496Re-query CCDS DB by Protein ID:NP_001269425Link to BLAST:NP_001269425.1
Original member Current member NCBI NM_001321800.2 NP_001308729.1 Accepted alive Link to Nucleotide Sequence:NM_001321800.2Link to Protein Sequence:NP_001308729.1Re-query CCDS DB by Nucleotide ID:NM_001321800Re-query CCDS DB by Protein ID:NP_001308729Link to BLAST:NP_001308729.1
Original member Current member NCBI NM_024325.6 NP_077301.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024325.6Link to Protein Sequence:NP_077301.4Re-query CCDS DB by Nucleotide ID:NM_024325Re-query CCDS DB by Protein ID:NP_077301Link to BLAST:NP_077301.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269424.1 599 Q6P1L6-1 599 100% 0 0
NP_001269425.1 599 Q6P1L6-1 599 100% 0 0
NP_001308729.1 599 Q6P1L6-1 599 100% 0 0
NP_077301.4 599 Q6P1L6-1 599 100% 0 0

Chromosomal Locations for CCDS 13028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2483161 2484656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2492699 2492825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2493519 2493577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2493778 2493895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGATGTTGCCTTATCCTTCAGCACTGGGAGATCAATACTGGGAAGAGATTTTGCTTCCAAAGAATGGGG
AAAATGTAGAGACTATGAAGAAATTGACCCAAAATCATAAAGCGAAAGGCTTGCCTTCTAATGATACTGA
CTGCCCCCAGAAAAAGGAGGGAAAGGCCCAAATAGTGGTACCAGTTACATTCAGGGATGTGACTGTGATC
TTCACAGAAGCAGAATGGAAGAGACTGAGTCCAGAGCAGAGGAATCTATACAAAGAAGTGATGCTGGAGA
ATTACAGGAATCTTCTCTCATTGGCAGAACCAAAGCCAGAAATCTACACTTGTTCCTCCTGCCTTCTGGC
CTTCTCCTGTCAGCAGTTCCTCAGTCAACATGTACTTCAGATCTTCCTGGGCTTATGTGCAGAAAATCAC
TTCCATCCAGGGAATTCTAGCCCAGGGCATTGGAAACAGCAGGGGCAGCAGTATTCCCATGTAAGCTGTT
GGTTTGAAAATGCAGAAGGTCAGGAGAGAGGAGGTGGCTCCAAACCCTGGTCTGCAAGGACAGAGGAGAG
AGAAACCTCAAGGGCATTCCCCAGCCCACTCCAAAGACAGTCAGCAAGTCCTAGAAAAGGCAACATGGTG
GTAGAAACAGAGCCCAGCTCAGCCCAAAGACCAAACCCTGTGCAGCTAGACAAAGGCTTGAAGGAATTAG
AAACCTTGAGATTTGGAGCAATCAACTGTAGAGAGTATGAACCGGACCATAACCTGGAATCAAACTTTAT
TACAAACCCGAGGACCCTCTTAGGGAAGAAGCCCTACATTTGCAGTGATTGTGGGCGAAGCTTTAAAGAT
AGATCAACCCTCATCAGACACCATCGTATACACTCGATGGAGAAGCCTTATGTGTGCAGTGAGTGCGGGC
GAGGTTTTAGCCAGAAGTCCAACCTCAGCAGACACCAGAGAACACATTCAGAAGAGAAGCCTTATTTGTG
CAGGGAGTGTGGGCAAAGCTTTAGAAGTAAGTCCATCCTCAATAGACATCAGTGGACTCACTCAGAGGAG
AAGCCCTATGTTTGCAGCGAGTGTGGGCGAGGCTTTAGCGAGAAGTCATCCTTCATCAGACACCAGAGGA
CACACTCCGGTGAGAAACCCTATGTGTGCCTGGAGTGTGGACGAAGCTTTTGTGATAAGTCAACCCTCAG
AAAACACCAGAGGATACACTCAGGGGAGAAGCCTTATGTTTGCAGGGAGTGTGGGCGAGGCTTTAGCCAG
AACTCAGATCTCATCAAACACCAGAGGACACACTTGGATGAGAAGCCTTATGTTTGCAGGGAGTGTGGGC
GAGGCTTTTGTGACAAGTCAACCCTCATCATACACGAGCGGACGCACTCTGGAGAGAAGCCTTATGTGTG
TGGTGAGTGTGGCCGAGGCTTTAGTCGGAAATCACTCCTCCTTGTCCACCAGAGGACACACTCAGGGGAG
AAGCATTATGTCTGCAGGGAGTGTAGGCGAGGTTTTAGCCAGAAGTCAAATCTCATCAGACACCAGAGGA
CGCACTCAAATGAGAAGCCTTATATTTGCAGGGAATGTGGGCGAGGCTTTTGTGACAAGTCAACCCTCAT
TGTACATGAGAGGACACACTCAGGAGAGAAGCCTTACGTGTGCAGTGAGTGTGGCCGAGGCTTTAGCCGG
AAATCACTCCTCCTTGTCCACCAGAGGACACACTCAGGGGAGAAGCATTATGTTTGTAGGGAGTGTGGGC
GAGGCTTTAGTCATAAGTCAAATCTCATCAGACACCAGAGGACACACTGA

Translation (599 aa):
MMLPYPSALGDQYWEEILLPKNGENVETMKKLTQNHKAKGLPSNDTDCPQKKEGKAQIVVPVTFRDVTVI
FTEAEWKRLSPEQRNLYKEVMLENYRNLLSLAEPKPEIYTCSSCLLAFSCQQFLSQHVLQIFLGLCAENH
FHPGNSSPGHWKQQGQQYSHVSCWFENAEGQERGGGSKPWSARTEERETSRAFPSPLQRQSASPRKGNMV
VETEPSSAQRPNPVQLDKGLKELETLRFGAINCREYEPDHNLESNFITNPRTLLGKKPYICSDCGRSFKD
RSTLIRHHRIHSMEKPYVCSECGRGFSQKSNLSRHQRTHSEEKPYLCRECGQSFRSKSILNRHQWTHSEE
KPYVCSECGRGFSEKSSFIRHQRTHSGEKPYVCLECGRSFCDKSTLRKHQRIHSGEKPYVCRECGRGFSQ
NSDLIKHQRTHLDEKPYVCRECGRGFCDKSTLIIHERTHSGEKPYVCGECGRGFSRKSLLLVHQRTHSGE
KHYVCRECRRGFSQKSNLIRHQRTHSNEKPYICRECGRGFCDKSTLIVHERTHSGEKPYVCSECGRGFSR
KSLLLVHQRTHSGEKHYVCRECGRGFSHKSNLIRHQRTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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