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Report for CCDS12970.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12970.2 Public Homo sapiens 19 ZNF135 24 110 108 CCDS HistoryNCBI Gene:7694Re-query CCDS DB by CCDS ID:12970.2Re-query CCDS DB by GeneID:7694See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12970.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12970.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511556.5 ENSP00000422074.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511556.5Link to Ensembl Protein Viewer:ENSP00000422074.1Re-query CCDS DB by Nucleotide ID:ENST00000511556Re-query CCDS DB by Protein ID:ENSP00000422074
Original member Current member NCBI NM_003436.4 NP_003427.3 Accepted alive Link to Nucleotide Sequence:NM_003436.4Link to Protein Sequence:NP_003427.3Re-query CCDS DB by Nucleotide ID:NM_003436Re-query CCDS DB by Protein ID:NP_003427Link to BLAST:NP_003427.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003427.3 670 P52742-3 670 100% 0 0

Chromosomal Locations for CCDS 12970.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58060003 58060035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58061580 58061706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58063446 58063541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58066705 58068461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGACCCCTGGGGTGCGCGTCTCCACAGACCCGGAGCAAGTGACGTTTGAGGACGTGGTAGTGGGCTTCA
GCCAGGAGGAGTGGGGGCAGCTGAAGCCTGCCCAGAGGACCCTGTACCGTGATGTAATGCTGGACACCTT
CAGGCTTCTGGTCTCTGTGGGACATTGGTTACCGAAGCCGAATGTCATCTCCCTGCTGGAGCAAGAGGCA
GAGCTGTGGGCGGTGGAGTCTAGACTTCCCCAAGGCGTGTACCCAGAGATTAAGGGACATTTCCAGTTTT
TGCTTCTTTCAGACTTGGAAACTAGACCCAAAGTCAAACTGTCAGTTCTAAAGCAAGGCATCTCTGAAGA
AATATCCAACAGTGTCATCTTGGTAGAAAGATTCCTGTGGGATGGTCTGTGGTACTGCAGGGGTGAGGAC
ACTGAGGGCCACTGGGAATGGAGTTGTGAGAGTCTAGAGAGCCTGGCAGTGCCGGTGGCCTTCACGCCTG
TGAAGACGCCTGTTCTGGAGCAGTGGCAGAGGAATGGGTTTGGGGAAAACATAAGTCTGAACCCTGATCT
CCCACATCAACCAATGACTCCTGAAAGACAAAGCCCCCACACATGGGGAACACGTGGAAAAAGGGAGAAG
CCAGACCTAAATGTTTTACAGAAAACCTGTGTAAAAGAGAAACCCTACAAATGTCAGGAATGCGGAAAGG
CCTTTAGTCACAGCTCAGCACTTATCGAACACCACCGGACGCACACAGGAGAGAGACCTTACGAATGTCA
CGAATGCTTAAAAGGCTTCCGGAACAGCTCGGCACTTACCAAACACCAGAGAATCCATACTGGGGAGAAA
CCCTATAAATGCACTCAGTGTGGGAGGACCTTCAACCAAATTGCCCCACTGATCCAGCACCAGAGAACTC
ACACAGGTGAGAAGCCCTATGAATGCAGCGAATGTGGGAAATCCTTCAGTTTTAGGTCCTCCTTCAGCCA
GCACGAGCGAACTCACACAGGCGAGAAGCCCTACGAGTGCAGTGAGTGTGGGAAAGCCTTCCGGCAAAGC
ATCCACCTCACCCAGCATCTGCGAATCCACACTGGGGAGAAACCCTATCAGTGTGGTGAGTGTGGCAAGG
CCTTCAGCCACAGCTCATCCTTGACCAAACACCAGCGAATCCACACAGGGGAGAAGCCCTACGAGTGCCA
TGAGTGTGGAAAAGCCTTCACCCAGATCACACCACTGATTCAGCACCAGAGGACCCACACAGGAGAAAAG
CCCTATGAGTGTGGTGAGTGTGGGAAAGCCTTCAGTCAGAGCACACTCCTGACCGAGCATCGGAGGATTC
ACACAGGAGAGAAGCCCTATGGATGCAACGAGTGTGGGAAAACCTTCAGCCACAGCTCCTCACTCAGCCA
GCATGAGCGGACACACACAGGAGAGAAGCCCTATGAGTGCAGTCAGTGTGGGAAGGCCTTCCGGCAGAGC
ACACACCTCACCCAACACCAGCGAATCCACACAGGGGAGAAGCCCTATGAATGCAATGACTGCGGCAAGG
CATTCAGTCACAGCTCGTCCCTCACCAAACATCAGCGAATCCACACTGGGGAGAAGCCCTACGAATGCAA
CCAGTGTGGCAGAGCCTTCAGCCAGCTTGCTCCCCTCATTCAGCATCAGAGGATCCACACAGGAGAGAAA
CCCTATGAATGTAACCAGTGTGGCAGAGCCTTCAGCCAGAGCTCCCTTCTCATCGAACACCAGAGGATTC
ACACCAAGGAAAAGCCGTATGGGTGCAATGAGTGTGGGAAATCCTTCAGCCACAGCTCCTCGCTCAGCCA
GCACGAAAGGACGCACACTGGGGAAAAGCCCTATGAGTGTCACGATTGCGGAAAGTCCTTTAGGCAGAGC
ACCCACCTCACTCAGCACCGGAGGATCCACACAGGAGAGAAGCCATATGCATGCAGGGACTGTGGAAAGG
CCTTTACCCACAGCTCCTCCCTTACCAAGCACCAGAGAACTCACACTGGATAA

Translation (670 aa):
MTPGVRVSTDPEQVTFEDVVVGFSQEEWGQLKPAQRTLYRDVMLDTFRLLVSVGHWLPKPNVISLLEQEA
ELWAVESRLPQGVYPEIKGHFQFLLLSDLETRPKVKLSVLKQGISEEISNSVILVERFLWDGLWYCRGED
TEGHWEWSCESLESLAVPVAFTPVKTPVLEQWQRNGFGENISLNPDLPHQPMTPERQSPHTWGTRGKREK
PDLNVLQKTCVKEKPYKCQECGKAFSHSSALIEHHRTHTGERPYECHECLKGFRNSSALTKHQRIHTGEK
PYKCTQCGRTFNQIAPLIQHQRTHTGEKPYECSECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQS
IHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTGEKPYECHECGKAFTQITPLIQHQRTHTGEK
PYECGECGKAFSQSTLLTEHRRIHTGEKPYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQS
THLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEK
PYECNQCGRAFSQSSLLIEHQRIHTKEKPYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQS
THLTQHRRIHTGEKPYACRDCGKAFTHSSSLTKHQRTHTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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