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Report for CCDS12919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12919.1 Public Homo sapiens 19 SYT5 24 110 108 CCDS HistoryNCBI Gene:6861Re-query CCDS DB by CCDS ID:12919.1Re-query CCDS DB by GeneID:6861See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354308.8 ENSP00000346265.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354308.8Link to Ensembl Protein Viewer:ENSP00000346265.2Re-query CCDS DB by Nucleotide ID:ENST00000354308Re-query CCDS DB by Protein ID:ENSP00000346265
Original member Current member EBI ENST00000537500.5 ENSP00000442896.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537500.5Link to Ensembl Protein Viewer:ENSP00000442896.1Re-query CCDS DB by Nucleotide ID:ENST00000537500Re-query CCDS DB by Protein ID:ENSP00000442896
Original member Current member NCBI NM_003180.3 NP_003171.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003180.3Link to Protein Sequence:NP_003171.2Re-query CCDS DB by Nucleotide ID:NM_003180Re-query CCDS DB by Protein ID:NP_003171Link to BLAST:NP_003171.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003171.2 386 O00445-1 386 100% 0 0

Chromosomal Locations for CCDS 12919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55173484 55173684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55174517 55174650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55174882 55174999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55175172 55175339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55175709 55175876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55176005 55176124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55178196 55178368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55178963 55179041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTTCCCGGAGCCCCCAACCCCGGGGCCTCCATCGCCCGACACGCCTCCCGACTCCAGTCGCATCAGCC
ACGGCCCAGTGCCCCCCTGGGCCCTGGCCACCATCGTGCTGGTCTCAGGCCTCCTCATCTTCAGCTGCTG
TTTCTGTCTCTACCGGAAGAGCTGTCGGAGGCGGACAGGCAAGAAGAGCCAGGCCCAAGCCCAGGTCCAC
CTTCAGGAAGTGAAGGGGCTGGGCCAGAGTTACATAGACAAGGTGCAGCCAGAAGTAGAGGAGCTGGAGC
CAGCACCATCCGGGCCAGGGCAGCAGGTGGCAGACAAGCATGAGCTAGGACGACTGCAGTACTCCCTGGA
TTATGACTTCCAGAGTGGCCAGCTGCTGGTGGGCATTCTGCAAGCAATGGGATTGGCAGCCTTGGATCTT
GGTGGCTCCTCGGACCCCTATGTGCGGGTCTACCTGCTGCCGGACAAACGGAGGCGGTACGAGACCAAGG
TGCATCGGCAGACGCTGAACCCTCACTTTGGGGAGACCTTCGCCTTCAAGGTCCCCTACGTGGAGCTGGG
GGGCAGGGTGCTGGTCATGGCGGTGTACGACTTCGACCGCTTCTCTCGCAATGACGCCATCGGGGAGGTG
CGGGTCCCTATGAGCTCCGTGGACCTGGGGCGGCCAGTGCAGGCCTGGCGGGAGCTGCAGGCGGCTCCGC
GGGAGGAGCAGGAGAAGCTTGGGGACATCTGCTTCTCCCTCCGCTATGTCCCCACGGCCGGGAAGCTCAC
CGTCATCGTCCTGGAGGCTAAAAACCTGAAGAAGATGGACGTAGGAGGACTGTCAGATCCATACGTCAAG
GTCCACCTGCTGCAGGGCGGCAAAAAGGTGCGGAAGAAGAAAACCACCATCAAGAAGAACACTCTGAACC
CCTATTACAACGAAGCTTTCAGCTTCGAGGTGCCCTGTGACCAAGTCCAGAAGGTGCAGGTGGAGCTGAC
CGTGCTGGACTACGACAAGCTGGGCAAGAACGAGGCCATCGGGAGGGTGGCCGTGGGGGCGGCCGCCGGC
GGGGCTGGCCTGCGGCACTGGGCGGACATGCTGGCCAACCCGCGGCGGCCCATTGCCCAGTGGCACTCGC
TGCGGCCCCCGGACCGAGTGAGGCTGCTGCCTGCGCCCTGA

Translation (386 aa):
MFPEPPTPGPPSPDTPPDSSRISHGPVPPWALATIVLVSGLLIFSCCFCLYRKSCRRRTGKKSQAQAQVH
LQEVKGLGQSYIDKVQPEVEELEPAPSGPGQQVADKHELGRLQYSLDYDFQSGQLLVGILQAMGLAALDL
GGSSDPYVRVYLLPDKRRRYETKVHRQTLNPHFGETFAFKVPYVELGGRVLVMAVYDFDRFSRNDAIGEV
RVPMSSVDLGRPVQAWRELQAAPREEQEKLGDICFSLRYVPTAGKLTVIVLEAKNLKKMDVGGLSDPYVK
VHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFEVPCDQVQKVQVELTVLDYDKLGKNEAIGRVAVGAAAG
GAGLRHWADMLANPRRPIAQWHSLRPPDRVRLLPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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