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Report for CCDS12860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12860.1 Public Homo sapiens 19 ZNF415 24 110 108 CCDS HistoryNCBI Gene:55786Re-query CCDS DB by CCDS ID:12860.1Re-query CCDS DB by GeneID:55786See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243643.9 ENSP00000243643.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243643.9Link to Ensembl Protein Viewer:ENSP00000243643.3Re-query CCDS DB by Nucleotide ID:ENST00000243643Re-query CCDS DB by Protein ID:ENSP00000243643
Original member Current member EBI ENST00000421033.5 ENSP00000395055.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421033.5Link to Ensembl Protein Viewer:ENSP00000395055.2Re-query CCDS DB by Nucleotide ID:ENST00000421033Re-query CCDS DB by Protein ID:ENSP00000395055
Original member Current member NCBI NM_001164309.3 NP_001157781.1 Accepted alive Link to Nucleotide Sequence:NM_001164309.3Link to Protein Sequence:NP_001157781.1Re-query CCDS DB by Nucleotide ID:NM_001164309Re-query CCDS DB by Protein ID:NP_001157781Link to BLAST:NP_001157781.1
Original member Current member NCBI NM_001352146.2 NP_001339075.1 Accepted alive Link to Nucleotide Sequence:NM_001352146.2Link to Protein Sequence:NP_001339075.1Re-query CCDS DB by Nucleotide ID:NM_001352146Re-query CCDS DB by Protein ID:NP_001339075Link to BLAST:NP_001339075.1
Original member Current member NCBI NM_018355.4 NP_060825.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018355.4Link to Protein Sequence:NP_060825.2Re-query CCDS DB by Nucleotide ID:NM_018355Re-query CCDS DB by Protein ID:NP_060825Link to BLAST:NP_060825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157781.1 555 Q09FC8-5 555 100% 0 0
NP_001339075.1 555 Q09FC8-5 555 100% 0 0
NP_060825.2 555 Q09FC8-5 555 100% 0 0

Chromosomal Locations for CCDS 12860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53108377 53109908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53116313 53116433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53122662 53122676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCTTTTACTCAGTTGACATTCAGGGACGTGGCCATCGAATTCTCTCAAGATGAGTGGAAATGCCTGA
ACTCTACACAGAGGACTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGATCT
GTCTCGTAACTGTGTAATCAAGGAACTAGCACCACAACAGGAAGGTAACCCAGGAGAAGTATTCCACACA
GTGACATTGGAACAACATGAAAAACATGACATTGAAGAGTTTTGCTTCAGGGAAATCAAGAAAAAAATAC
ACGACTTTGACTGTCAGTGGAGAGATGATGAAAGAAATTGCAACAAAGTGACTACGGCCCCAAAAGAAAA
TCTTACTTGTAGGAGAGACCAACGCGATAGAAGAGGTATAGGAAACAAGTCTATTAAACATCAGCTTGGA
TTAAGCTTTCTACCACATCCCCATGAACTGCAGCAGTTTCAAGCTGAAGGGAAAATTTATGAATGTAACC
ATGTTGAGAAGTCTGTCAACCATGGTTCCTCAGTTTCACCACCCCAAATAATTTCTTCTACCATCAAAAC
CCATGTTTCTAATAAATATGGGACTGATTTCATCTGTTCTTCATTACTCACACAAGAACAGAAATCATGC
ATTAGGGAAAAACCTTACAGATATATTGAGTGCGACAAAGCCTTGAATCATGGCTCACACATGACTGTAC
GTCAGGTAAGTCATTCTGGAGAGAAAGGATATAAATGTGATCTGTGTGGCAAGGTCTTTAGTCAAAAATC
AAACCTTGCGCGTCATTGGAGAGTTCATACTGGAGAGAAACCATACAAATGTAATGAATGTGACAGAAGT
TTCAGTCGCAACTCATGCCTTGCACTACATCGGAGAGTTCACACTGGAGAGAAACCTTACAAATGTTATG
AGTGTGACAAGGTCTTCAGTCGAAATTCATGCCTTGCACTACATCAGAAAACTCATATTGGAGAGAAACC
TTACACATGTAAAGAGTGTGGCAAAGCCTTTAGTGTGAGGTCAACACTTACCAACCATCAGGTAATTCAT
AGTGGCAAGAAACCTTACAAATGCAATGAATGTGGCAAGGTGTTCAGTCAGACTTCAAGCCTTGCAACTC
ATCAGAGAATTCACACTGGGGAGAAACCATACAAGTGTAATGAATGTGGTAAAGTCTTCAGTCAGACTTC
AAGCCTTGCAAGGCATTGGAGAATTCATACTGGAGAGAAACCTTACAAATGCAATGAATGTGGTAAGGTT
TTCAGTTACAATTCACACCTTGCGAGTCATCGGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATG
AGTGTGGGAAAGCCTTTAGTGTGCATTCGAACTTAACTACCCATCAGGTCATCCATACTGGAGAGAAGCC
TTACAAATGTAATCAATGTGGCAAAGGCTTCAGTGTGCATTCAAGCCTAACTACCCATCAGGTCATCCAT
ACTGGAGAAAAACCTTACAAATGTAATGAGTGTGGCAAATCCTTTAGTGTGCGCCCAAACCTCACTAGAC
ATCAGATAATCCATACTGGAAAGAAACCTTACAAATGTAGTGATTGTGGGAAGTCCTTTAGTGTGCGCCC
AAACCTCTTCAGACATCAAATTATCCATACTAAGGAGAAACCTTATAAAAGAAATTAA

Translation (555 aa):
MAFTQLTFRDVAIEFSQDEWKCLNSTQRTLYRDVMLENYRNLVSLDLSRNCVIKELAPQQEGNPGEVFHT
VTLEQHEKHDIEEFCFREIKKKIHDFDCQWRDDERNCNKVTTAPKENLTCRRDQRDRRGIGNKSIKHQLG
LSFLPHPHELQQFQAEGKIYECNHVEKSVNHGSSVSPPQIISSTIKTHVSNKYGTDFICSSLLTQEQKSC
IREKPYRYIECDKALNHGSHMTVRQVSHSGEKGYKCDLCGKVFSQKSNLARHWRVHTGEKPYKCNECDRS
FSRNSCLALHRRVHTGEKPYKCYECDKVFSRNSCLALHQKTHIGEKPYTCKECGKAFSVRSTLTNHQVIH
SGKKPYKCNECGKVFSQTSSLATHQRIHTGEKPYKCNECGKVFSQTSSLARHWRIHTGEKPYKCNECGKV
FSYNSHLASHRRVHTGEKPYKCNECGKAFSVHSNLTTHQVIHTGEKPYKCNQCGKGFSVHSSLTTHQVIH
TGEKPYKCNECGKSFSVRPNLTRHQIIHTGKKPYKCSDCGKSFSVRPNLFRHQIIHTKEKPYKRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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