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Report for CCDS12690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12690.1 Public Homo sapiens 19 STRN4 24 110 108 CCDS HistoryNCBI Gene:29888Re-query CCDS DB by CCDS ID:12690.1Re-query CCDS DB by GeneID:29888See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 12690.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263280.11 ENSP00000263280.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263280.11Link to Ensembl Protein Viewer:ENSP00000263280.4Re-query CCDS DB by Nucleotide ID:ENST00000263280Re-query CCDS DB by Protein ID:ENSP00000263280
Original member Current member NCBI NM_013403.3 NP_037535.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013403.3Link to Protein Sequence:NP_037535.2Re-query CCDS DB by Nucleotide ID:NM_013403Re-query CCDS DB by Protein ID:NP_037535Link to BLAST:NP_037535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037535.2 753 Q9NRL3-1 753 100% 0 0

Chromosomal Locations for CCDS 12690.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46720602 46720771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46721986 46722072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46722242 46722340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46722810 46722950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46723114 46723284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46724807 46724928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46725332 46725379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46725473 46725648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46727452 46727546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46727894 46728007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46728618 46728777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46730732 46730873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46733039 46733236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46736823 46736901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46738164 46738237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46738785 46738888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46746149 46746430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGATGGAGGAGCGAGCGGCCGCCGCGGTCGCCGCCGCCGCCTCCTCCTGCCGTCCGCTCGGCTCAGGCG
CGGGCCCTGGCCCCACTGGGGCGGCCCCGGTCTCCGCCCCTGCCCCCGGGCCGGGCCCGGCAGGTAAGGG
AGGCGGCGGCGGAGGCAGCCCCGGGCCCACGGCGGGCCCGGAGCCCCTGAGCCTGCCGGGGATCCTGCAC
TTTATCCAGCACGAGTGGGCGCGCTTCGAAGCCGAGAAAGCCCGCTGGGAGGCCGAGCGCGCCGAGTTAC
AGGCTCAGGTGGCCTTCCTTCAGGGAGAGAGGAAAGGGCAGGAGAATCTAAAGACGGACCTGGTGCGGCG
GATCAAGATGCTAGAGTATGCGCTGAAGCAGGAAAGGGCCAAATATCATAAACTGAAGTTTGGGACAGAC
CTGAACCAGGGGGAGAAGAAAGCAGATGTGTCAGAACAAGTCTCCAATGGCCCCGTGGAATCGGTCACCC
TGGAGAACAGCCCGTTGGTGTGGAAGGAGGGGCGGCAGCTTCTCCGACAGTACCTGGAAGAGGTGGGCTA
CACAGACACCATCCTCGACATGCGGTCCAAGCGCGTCCGTTCCCTGCTGGGCCGCTCGCTGGAGCTCAAC
GGGGCAGTGGAGCCGAGTGAAGGGGCCCCCAGGGCTCCACCAGGCCCTGCAGGGCTCAGTGGTGGGGAGT
CGCTGCTGGTGAAACAGATCGAGGAGCAGATAAAGAGGAACGCGGCAGGCAAAGATGGCAAAGAGCGCTT
GGGCGGCTCAGTGCTGGGGCAGATCCCCTTCCTGCAGAACTGCGAGGACGAAGACAGCGACGAGGACGAT
GAGCTGGACAGCGTGCAGCACAAGAAGCAGCGTGTGAAGCTCCCATCCAAGGCTCTGGTGCCCGAAATGG
AAGACGAGGATGAGGAAGACGACTCTGAGGATGCTATCAATGAGTTTGATTTCCTGGGCTCAGGAGAGGA
TGGGGAAGGGGCTCCAGACCCTCGGCGGTGCACTGTGGATGGGAGCCCCCATGAGCTGGAAAGCCGTCGG
GTCAAACTCCAAGGCATTCTGGCTGACCTGCGGGATGTGGATGGGCTGCCCCCAAAAGTGACTGGCCCGC
CTCCTGGCACACCCCAGCCCCGGCCACATGAAGACGTCTTCATCATGGACACTATCGGGGGCGGGGAGGT
GAGCCTGGGGGACTTGGCAGATCTCACCGTCACCAACGACAACGACCTCAGCTGCGATCTGTCTGACAGC
AAAGATGCTTTTAAGAAGACGTGGAACCCCAAGTTCACCCTGCGCTCGCACTACGACGGCATTCGTTCCC
TGGCCTTCCACCACAGCCAGTCGGCTCTGCTCACCGCCTCCGAGGACGGCACGCTCAAGCTCTGGAACCT
GCAGAAGGCGGTCACGGCCAAGAAGAATGCGGCGCTAGATGTGGAACCTATACATGCTTTCCGGGCTCAC
AGGGGCCCAGTGTTGGCTGTGGCTATGGGCAGCAACAGTGAATACTGCTACAGTGGCGGGGCAGATGCCT
GCATCCATAGTTGGAAGATTCCAGACCTCAGCATGGATCCCTATGATGGCTACGACCCAAGCGTGCTGAG
CCACGTCCTGGAGGGCCACGGGGACGCCGTGTGGGGCCTGGCCTTCAGTCCCACCTCCCAGCGCCTGGCC
TCCTGTTCTGCTGATGGCACCGTCCGCATCTGGGACCCCAGCAGCAGCAGCCCGGCCTGCCTCTGCACCT
TCCCCACAGCCAGCGAGCACGGGGTCCCCACCTCAGTGGCCTTCACCAGCACCGAGCCTGCCCACATCGT
GGCCTCCTTCCGCTCTGGCGACACCGTCTTGTATGACATGGAGGTTGGCAGTGCCCTCCTCACGCTGGAG
TCCCGGGGCAGCAGCGGTCCAACCCAGATCAACCAAGTGGTGAGTCATCCAAACCAGCCTCTCACCATCA
CCGCCCACGACGACAGGGGCATCCGCTTCCTGGACAATCGGACAGGTAAGCCGGTGCACTCCATGGTTGC
ACACCTGGACGCAGTCACCTGCCTAGCCGTGGACCCCAACGGCGCATTCCTGATGTCAGGAAGCCATGAC
TGCTCCCTGCGTCTCTGGAGCCTGGACAACAAAACGTGCGTGCAGGAGATCACGGCCCACCGCAAGAAGC
ACGAGGAGGCCATCCACGCTGTTGCCTGCCACCCCAGCAAGGCCCTCATTGCCAGTGCTGGCGCTGATGC
CCTGGCCAAGGTCTTCGTATGA

Translation (753 aa):
MMEERAAAAVAAAASSCRPLGSGAGPGPTGAAPVSAPAPGPGPAGKGGGGGGSPGPTAGPEPLSLPGILH
FIQHEWARFEAEKARWEAERAELQAQVAFLQGERKGQENLKTDLVRRIKMLEYALKQERAKYHKLKFGTD
LNQGEKKADVSEQVSNGPVESVTLENSPLVWKEGRQLLRQYLEEVGYTDTILDMRSKRVRSLLGRSLELN
GAVEPSEGAPRAPPGPAGLSGGESLLVKQIEEQIKRNAAGKDGKERLGGSVLGQIPFLQNCEDEDSDEDD
ELDSVQHKKQRVKLPSKALVPEMEDEDEEDDSEDAINEFDFLGSGEDGEGAPDPRRCTVDGSPHELESRR
VKLQGILADLRDVDGLPPKVTGPPPGTPQPRPHEDVFIMDTIGGGEVSLGDLADLTVTNDNDLSCDLSDS
KDAFKKTWNPKFTLRSHYDGIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAH
RGPVLAVAMGSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDPSVLSHVLEGHGDAVWGLAFSPTSQRLA
SCSADGTVRIWDPSSSSPACLCTFPTASEHGVPTSVAFTSTEPAHIVASFRSGDTVLYDMEVGSALLTLE
SRGSSGPTQINQVVSHPNQPLTITAHDDRGIRFLDNRTGKPVHSMVAHLDAVTCLAVDPNGAFLMSGSHD
CSLRLWSLDNKTCVQEITAHRKKHEEAIHAVACHPSKALIASAGADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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