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Report for CCDS12615.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12615.2 Public Homo sapiens 19 PSG11 24 110 108 CCDS HistoryNCBI Gene:5680Re-query CCDS DB by CCDS ID:12615.2Re-query CCDS DB by GeneID:5680See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12615.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306322.7 ENSP00000304913.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306322.7Link to Ensembl Protein Viewer:ENSP00000304913.6Re-query CCDS DB by Nucleotide ID:ENST00000306322Re-query CCDS DB by Protein ID:ENSP00000304913
Original member Current member EBI ENST00000403486.5 ENSP00000385427.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403486.5Link to Ensembl Protein Viewer:ENSP00000385427.1Re-query CCDS DB by Nucleotide ID:ENST00000403486Re-query CCDS DB by Protein ID:ENSP00000385427
Original member Current member NCBI NM_001113410.2 NP_001106881.1 Accepted alive Link to Nucleotide Sequence:NM_001113410.2Link to Protein Sequence:NP_001106881.1Re-query CCDS DB by Nucleotide ID:NM_001113410Re-query CCDS DB by Protein ID:NP_001106881Link to BLAST:NP_001106881.1
Original member Current member NCBI NM_203287.2 NP_976032.2 Accepted alive Link to Nucleotide Sequence:NM_203287.2Link to Protein Sequence:NP_976032.2Re-query CCDS DB by Nucleotide ID:NM_203287Re-query CCDS DB by Protein ID:NP_976032Link to BLAST:NP_976032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106881.1 213 Q9UQ72-2 213 100% 0 0
NP_976032.2 213 Q9UQ72-2 213 100% 0 0

Chromosomal Locations for CCDS 12615.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43009998 43010041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43015116 43015370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43018770 43019048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43026309 43026372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGGGCCCCTCTCAGCCCCTCCCTGCACAGAGCACATCAAATGGAAGGGGCTCCTGCTCACAGTGGAGA
CTCCCAAGCCCTCCATCTCCAGCAGCAACTTAAACCCCAGGGAGGCCATGGAGACTGTGATCTTAACCTG
TAATCCTGAGACTCCGGACGCAAGCTACCTGTGGTGGATGAATGGTCAGAGCCTCCCTATGACTCATAGG
ATGCAGCTGTCTGAAACCAACAGGACCCTCTTTCTATTTGGTGTCACAAAGTATACTGCAGGACCCTATG
AATGTGAAATATGGAACTCAGGGAGTGCCAGCCGCAGTGACCCAGTCACCCTGAATCTCCTCCATGGTCC
AGACCTCCCCAGAATTTTCCCTTCAGTCACCTCTTACTATTCAGGAGAGAACCTCGACTTGTCCTGCTTC
GCAAACTCTAACCCACCAGCACAGTATTCTTGGACAATTAATGGGAAGTTTCAGCTATCAGGACAAAAGC
TCTTTATCCCTCAGATTACTCCAAAGCATAATGGGCTCTATGCTTGCTCTGCTCGTAACTCAGCCACTGG
CGAGGAAAGCTCCACATCCTTGACAATCAGAGTCATTGCTCCTCCAGGATTAGGAACTTTTGCTTTCAAT
AATCCAACGTAG

Translation (213 aa):
MGPLSAPPCTEHIKWKGLLLTVETPKPSISSSNLNPREAMETVILTCNPETPDASYLWWMNGQSLPMTHR
MQLSETNRTLFLFGVTKYTAGPYECEIWNSGSASRSDPVTLNLLHGPDLPRIFPSVTSYYSGENLDLSCF
ANSNPPAQYSWTINGKFQLSGQKLFIPQITPKHNGLYACSARNSATGEESSTSLTIRVIAPPGLGTFAFN
NPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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