NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12527.1 Public Homo sapiens 19 FBXO27 24 110 108 CCDS HistoryNCBI Gene:126433Re-query CCDS DB by CCDS ID:12527.1Re-query CCDS DB by GeneID:126433See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292853.9 ENSP00000292853.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292853.9Link to Ensembl Protein Viewer:ENSP00000292853.3Re-query CCDS DB by Nucleotide ID:ENST00000292853Re-query CCDS DB by Protein ID:ENSP00000292853
Original member Current member EBI ENST00000509137.6 ENSP00000437662.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509137.6Link to Ensembl Protein Viewer:ENSP00000437662.1Re-query CCDS DB by Nucleotide ID:ENST00000509137Re-query CCDS DB by Protein ID:ENSP00000437662
Original member Current member NCBI NM_178820.5 NP_849142.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178820.5Link to Protein Sequence:NP_849142.1Re-query CCDS DB by Nucleotide ID:NM_178820Re-query CCDS DB by Protein ID:NP_849142Link to BLAST:NP_849142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849142.1 283 Q8NI29 283 100% 0 0

Chromosomal Locations for CCDS 12527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39025411 39025554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39026870 39027005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39031029 39031124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39031209 39031320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39031864 39032227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGGCGCCTCGGTCTCCAGGGGCCGGGCCGCCCGGGTCCCCGCGCCGGAGCCGGAACCCGAAGAGGCGC
TGGACCTGAGCCAACTACCCCCAGAGCTGCTTCTGGTGGTGCTGAGCCACGTCCCCCCGCGCACGCTGCT
CGGGCGCTGCCGCCAAGTGTGCCGGGGCTGGCGAGCCCTGGTGGACGGCCAGGCCCTGTGGCTGCTGATC
CTGGCCCGCGACCACGGCGCCACCGGCCGCGCGCTGCTGCACCTCGCCCGCAGCTGCCAGTCTCCCGCCC
GTAACGCCAGGCCTTGCCCCCTGGGCCGCTTCTGCGCGCGCAGACCCATCGGACGCAACCTTATTCGCAA
CCCCTGCGGCCAAGAAGGCCTCCGAAAGTGGATGGTGCAACACGGTGGGGACGGCTGGGTGGTGGAGGAA
AACAGGACAACCGTGCCTGGGGCCCCTTCTCAGACGTGCTTCGTGACTTCATTCAGCTGGTGTTGCAAGA
AGCAGGTCTTGGACCTAGAGGAGGAGGGTCTGTGGCCAGAACTGCTGGATAGTGGCAGGATTGAGATTTG
TGTCTCTGACTGGTGGGGAGCCCGACACGACAGCGGCTGTATGTACAGACTCCTCGTCCAACTTCTAGAC
GCCAACCAGACTGTTCTAGATAAATTCTCTGCTGTGCCTGATCCCATCCCGCAGTGGAACAACAATGCCT
GCCTTCACGTCACCCACGTGTTCTCCAACATCAAGATGGGCGTCCGCTTTGTGTCTTTCGAACACCGGGG
CCAGGACACACAGTTCTGGGCTGGCCACTATGGAGCCCGTGTGACCAACTCCAGTGTGATCGTGCGAGTC
CGTCTGTCCTAG

Translation (283 aa):
MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALVDGQALWLLI
LARDHGATGRALLHLARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCGQEGLRKWMVQHGGDGWVVEE
NRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPELLDSGRIEICVSDWWGARHDSGCMYRLLVQLLD
ANQTVLDKFSAVPDPIPQWNNNACLHVTHVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRV
RLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH