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Report for CCDS12483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12483.1 Public Homo sapiens 19 LRFN3 24 110 108 CCDS HistoryNCBI Gene:79414Re-query CCDS DB by CCDS ID:12483.1Re-query CCDS DB by GeneID:79414See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246529.4 ENSP00000246529.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246529.4Link to Ensembl Protein Viewer:ENSP00000246529.3Re-query CCDS DB by Nucleotide ID:ENST00000246529Re-query CCDS DB by Protein ID:ENSP00000246529
Original member Current member EBI ENST00000588831.5 ENSP00000466989.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588831.5Link to Ensembl Protein Viewer:ENSP00000466989.1Re-query CCDS DB by Nucleotide ID:ENST00000588831Re-query CCDS DB by Protein ID:ENSP00000466989
Original member Current member NCBI NM_024509.2 NP_078785.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024509.2Link to Protein Sequence:NP_078785.1Re-query CCDS DB by Nucleotide ID:NM_024509Re-query CCDS DB by Protein ID:NP_078785Link to BLAST:NP_078785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078785.1 628 Q9BTN0 628 100% 0 0

Chromosomal Locations for CCDS 12483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35939426 35940840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35944548 35945019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGGCCATCCTCCCGTTGCTCCTGTGCCTGCTGCCGCTGGCCCCTGCCTCATCCCCACCCCAGTCAGCCA
CACCCAGCCCATGTCCCCGCCGCTGCCGCTGCCAGACACAGTCGCTGCCCCTAAGCGTGCTGTGCCCAGG
GGCAGGCCTCCTGTTCGTGCCACCCTCGCTGGACCGCCGGGCAGCCGAGCTGCGGCTGGCAGACAACTTC
ATCGCCTCCGTGCGCCGCCGCGACCTGGCCAACATGACAGGCCTGCTGCATCTGAGCCTGTCGCGGAACA
CCATCCGCCACGTGGCTGCCGGCGCCTTCGCCGACCTGCGGGCCCTGCGTGCCCTGCACCTGGATGGCAA
CCGGCTGACCTCACTGGGCGAGGGCCAGCTGCGCGGCCTGGTCAACTTGCGCCACCTCATCCTCAGCAAC
AACCAGCTGGCAGCGCTGGCGGCCGGCGCCCTGGATGATTGTGCCGAGACACTGGAGGACCTCGACCTCT
CCTACAACAACCTCGAGCAGCTGCCCTGGGAGGCCCTGGGCCGCCTGGGCAACGTCAACACGTTGGGCCT
CGACCACAACCTGCTGGCTTCTGTGCCCGCCGGCGCTTTTTCCCGCCTGCACAAGCTGGCCCGGCTGGAC
ATGACCTCCAACCGCCTGACCACAATCCCACCCGACCCACTCTTCTCCCGCCTGCCCCTGCTCGCCAGGC
CCCGGGGCTCGCCCGCCTCTGCCCTGGTGCTGGCCTTTGGCGGGAACCCCCTGCACTGCAACTGCGAGCT
GGTGTGGCTGCGTCGCCTGGCGCGGGAGGACGACCTCGAGGCCTGCGCGTCCCCACCTGCTCTGGGCGGC
CGCTACTTCTGGGCGGTGGGCGAGGAGGAGTTTGTCTGCGAGCCGCCCGTGGTGACTCACCGCTCACCAC
CTCTGGCTGTGCCCGCAGGTCGGCCGGCTGCCCTGCGCTGCCGGGCAGTGGGGGACCCAGAGCCCCGTGT
GCGTTGGGTGTCACCCCAGGGCCGGCTGCTAGGCAACTCAAGCCGTGCCCGCGCCTTCCCCAATGGGACG
CTGGAGCTGCTGGTCACCGAGCCGGGTGATGGTGGCATCTTCACCTGCATTGCGGCCAATGCAGCTGGCG
AGGCCACAGCTGCTGTGGAGCTGACTGTGGGTCCCCCACCACCTCCTCAGCTAGCCAACAGCACCAGCTG
TGACCCCCCGCGGGACGGGGATCCTGATGCTCTCACCCCACCCTCCGCTGCCTCTGCTTCTGCCAAGGTG
GCCGACACTGGGCCCCCTACCGACCGTGGCGTCCAGGTGACTGAGCACGGGGCCACAGCTGCTCTTGTCC
AGTGGCCGGATCAGCGGCCTATCCCGGGCATCCGCATGTACCAGATCCAGTACAACAGCTCGGCTGATGA
CATCCTCGTCTACAGGATGATCCCGGCGGAGAGCCGCTCGTTCCTGCTGACGGACCTGGCGTCAGGCCGG
ACCTACGATCTGTGCGTGCTCGCCGTGTATGAGGACAGCGCCACGGGGCTCACGGCCACGCGGCCTGTGG
GCTGCGCCCGCTTCTCCACCGAACCTGCGCTGCGGCCATGCGGGGCGCCGCACGCTCCCTTCCTGGGCGG
CACGATGATCATCGCGCTGGGCGGCGTCATCGTAGCCTCGGTACTGGTCTTCATCTTCGTGCTGCTAATG
CGCTACAAGGTGCACGGCGGCCAGCCCCCCGGCAAGGCCAAGATTCCCGCGCCTGTTAGCAGCGTTTGCT
CCCAGACCAACGGCGCCCTGGGCCCCACGCCCACGCCCGCCCCGCCCGCCCCGGAGCCCGCGGCGCTCAG
GGCCCACACCGTGGTCCAGCTGGACTGCGAGCCCTGGGGGCCCGGCCACGAACCTGTGGGACCCTAG

Translation (628 aa):
MAILPLLLCLLPLAPASSPPQSATPSPCPRRCRCQTQSLPLSVLCPGAGLLFVPPSLDRRAAELRLADNF
IASVRRRDLANMTGLLHLSLSRNTIRHVAAGAFADLRALRALHLDGNRLTSLGEGQLRGLVNLRHLILSN
NQLAALAAGALDDCAETLEDLDLSYNNLEQLPWEALGRLGNVNTLGLDHNLLASVPAGAFSRLHKLARLD
MTSNRLTTIPPDPLFSRLPLLARPRGSPASALVLAFGGNPLHCNCELVWLRRLAREDDLEACASPPALGG
RYFWAVGEEEFVCEPPVVTHRSPPLAVPAGRPAALRCRAVGDPEPRVRWVSPQGRLLGNSSRARAFPNGT
LELLVTEPGDGGIFTCIAANAAGEATAAVELTVGPPPPPQLANSTSCDPPRDGDPDALTPPSAASASAKV
ADTGPPTDRGVQVTEHGATAALVQWPDQRPIPGIRMYQIQYNSSADDILVYRMIPAESRSFLLTDLASGR
TYDLCVLAVYEDSATGLTATRPVGCARFSTEPALRPCGAPHAPFLGGTMIIALGGVIVASVLVFIFVLLM
RYKVHGGQPPGKAKIPAPVSSVCSQTNGALGPTPTPAPPAPEPAALRAHTVVQLDCEPWGPGHEPVGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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