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Report for CCDS12370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12370.1 Public Homo sapiens 19 ARRDC2 24 110 108 CCDS HistoryNCBI Gene:27106Re-query CCDS DB by CCDS ID:12370.1Re-query CCDS DB by GeneID:27106See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12370.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222250.5 ENSP00000222250.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222250.5Link to Ensembl Protein Viewer:ENSP00000222250.3Re-query CCDS DB by Nucleotide ID:ENST00000222250Re-query CCDS DB by Protein ID:ENSP00000222250
Original member Current member NCBI NM_015683.2 NP_056498.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015683.2Link to Protein Sequence:NP_056498.1Re-query CCDS DB by Nucleotide ID:NM_015683Re-query CCDS DB by Protein ID:NP_056498Link to BLAST:NP_056498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056498.1 407 Q8TBH0-1 407 100% 0 0

Chromosomal Locations for CCDS 12370.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18008311 18008584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18008711 18008777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18008971 18009118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18009592 18009694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18009783 18010039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18010196 18010358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18010572 18010729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18012913 18012966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGCTATTCGACAAGGTGAAAGCGTTCTCGGTGCAGTTGGACGGCGCGACCGCGGGCGTCGAGCCCGTGT
TTAGCGGCGGCCAGGCCGTGGCGGGCCGGGTGCTGCTGGAGCTGTCAAGCGCCGCGCGTGTGGGTGCCCT
GAGGCTGCGCGCGCGGGGCCGCGCCCACGTGCACTGGACCGAGTCGCGCAGCGCGGGCTCGAGCACGGCT
TACACGCAGAGCTACAGTGAACGCGTGGAGGTCGTGAGCCACCGCGCCACGCTCCTGGCGCCAGATACCG
GGGAGACCACGACGCTGCCTCCTGGGCGCCATGAGTTCCTGTTCAGCTTCCAGCTGCCCCCGACCCTGGT
GACATCCTTCGAGGGCAAACACGGTAGTGTCCGCTACTGTATCAAGGCCACCCTGCACCGGCCCTGGGTC
CCAGCACGCCGGGCAAGGAAGGTGTTCACTGTCATCGAGCCTGTGGACATCAACACGCCAGCCCTGCTGG
CACCTCAAGCGGGGGCTCGGGAAAAGGTTGCCCGATCCTGGTACTGTAACCGTGGCCTAGTCTCCCTTTC
GGCCAAGATCGACCGCAAGGGCTACACCCCAGGAGAGGTCATCCCTGTCTTTGCCGAGATCGACAACGGC
TCCACACGTCCTGTGCTGCCTCGGGCAGCCGTGGTGCAGACACAGACGTTCATGGCCCGAGGCGCCCGAA
AGCAGAAACGGGCAGTGGTGGCCAGCCTCGCGGGCGAGCCGGTGGGCCCCGGGCAGCGGGCGCTGTGGCA
GGGCCGGGCACTGCGGATCCCCCCAGTGGGTCCTTCCATCCTGCACTGCCGCGTTCTACACGTGGACTAC
GCACTCAAGGTCTGTGTGGATATCCCAGGAACGTCCAAGCTGCTGCTGGAGCTGCCACTGGTGATCGGCA
CCATTCCCTTGCACCCTTTTGGCAGCCGTTCCTCCAGCGTGGGCAGCCACGCCAGCTTCCTGCTGGACTG
GAGGCTGGGGGCCTTGCCGGAGCGGCCTGAGGCTCCTCCTGAGTACTCGGAGGTGGTAGCCGACACTGAG
GAGGCAGCCTTGGGGCAGAGCCCCTTCCCGCTTCCGCAGGACCCCGACATGAGCCTTGAAGGCCCGTTCT
TCGCCTACATCCAAGAGTTCCGCTACCGCCCGCCACCCCTGTACTCTGAGGAGGATCCAAACCCACTCTT
GGGGGACATGAGGCCGCGCTGCATGACTTGCTGA

Translation (407 aa):
MLFDKVKAFSVQLDGATAGVEPVFSGGQAVAGRVLLELSSAARVGALRLRARGRAHVHWTESRSAGSSTA
YTQSYSERVEVVSHRATLLAPDTGETTTLPPGRHEFLFSFQLPPTLVTSFEGKHGSVRYCIKATLHRPWV
PARRARKVFTVIEPVDINTPALLAPQAGAREKVARSWYCNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNG
STRPVLPRAAVVQTQTFMARGARKQKRAVVASLAGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDY
ALKVCVDIPGTSKLLLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTE
EAALGQSPFPLPQDPDMSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRCMTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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