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Report for CCDS12345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12345.1 Public Homo sapiens 19 C19orf44 24 110 108 CCDS HistoryNCBI Gene:84167Re-query CCDS DB by CCDS ID:12345.1Re-query CCDS DB by GeneID:84167See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221671.8 ENSP00000221671.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221671.8Link to Ensembl Protein Viewer:ENSP00000221671.2Re-query CCDS DB by Nucleotide ID:ENST00000221671Re-query CCDS DB by Protein ID:ENSP00000221671
Original member Current member NCBI NM_032207.4 NP_115583.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032207.4Link to Protein Sequence:NP_115583.1Re-query CCDS DB by Nucleotide ID:NM_032207Re-query CCDS DB by Protein ID:NP_115583Link to BLAST:NP_115583.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115583.1 657 Q9H6X5-1 657 100% 0 0

Chromosomal Locations for CCDS 12345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16500793 16501551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16503065 16503380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16506701 16506774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16509499 16509988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16513014 16513109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16514497 16514663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16517230 16517301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGCTTCTGCAAGGAAAGCCAGCCGTCCCATGCGTGATGTTTTTGGTGACTTCAGTGATGTTTCCTTGG
AAGATTCAACAATGGAAGAAATCAGAAACTTCCAGATCAGTAGAAATCTTACCAAAATAGCACCTGGTCA
TAGCAGATTTCTAAAAAGAAACCAAACTCTAGATGAGAAACACTTACTCCTGAAAGAGAACCCTGTGCTC
GGGAGTGGACCCAGGCTTGCCTCATGTAGACCGCCCACCACTGCCTCCAGGATCCGAGCCAATGCCGCAC
TCATGAAGCTGGCCCAGCTGGAAACCCGGATCATGAATCGGAAGCTGCAGAGGAATTTGTCTGACACGGA
ATCTGACTCAATGACCGCCGATGCTGGTCTTCCAAAGAGAGCTGACAGAATCCTCTCTGGGGGTGCACTC
GAACTCGCGTCCCAGAACACAGACAAAACTTCCCAGAATCAAGCCCGTGAACTTCCTGTCACCGAAAATA
ATGCACAGAACGCGAAGGTCAGTAGGTTTCTAAAGAAGAAACAAGCACCTGTTGAAAACATATCCCCTGA
AGCACCTGCTGGGAAAGAGAGGACTTTGCAAACCCCCAAACAGAAAGAACCTGCTAGAACATTTGATTCT
CCAGACAGTGACGAAGAAGAAATGAAAGTATTGCTAGGAAGCTTGATGGACTCTTCTAGAGAAAAAAACA
CGAATCAAGGCTTCAGCAGCGCTAACGTCAGCGAGGAAGAAGAAAGAAAACTATTTTCGGTCCCATCTCA
ACTGAGAGCATTTACTGTACCCAGCGTGGAACTCTCCAGCGCAAAGCCTTCTCAGACATCACACCTGCCA
ACCTCCCTGGCAGCAGACAGAACCCTTCACAGCACTCGCTCAAGAGCAGACTACCCACAGAGTCACGTTT
CCAGTGACACCGCCTCCCACACGCCGTCAGTTTCCATCACAGGCGCCTTTTCAAACTCAGTGTCTTTAAA
GATGGGGCATGTCAAGCTTGTGTCCTCCCCGGGAAGGAGTGAGGCTGAGACTGTGGACGAGCCAGTCTCA
GAAGGTGCTGATGACAGCCTCGACGAGTTTAGAATAAATATTTTATCGCTTGACGGTCTGGCTCCAGCTG
TCAGTGAGAACTCCGATTTGGAACAGGAAGAGGAAAGTGCTCAGAGACAAAAAACAGCTGGCAAAATCTT
CAGAGCCGAGGCGTCCACTGGGCAGGATGCCCCGAGGCAGGCCCAGGCGAGGAGCTGGGCATCACAGGGA
AAGGCCGCCTCTGCAGAGGGGGATGAGAGCGAGGTCTCGGAGCATCTCAGTGCCAGCTCGGCTTCTGCCA
TCCAGCAGGACAGCACTTCCAGCATGCAGCCACCATCTGAAGCCCCCATGGTGAACACAGTCAGCTCAGC
TTATTCGGAGGATTTTGAAAACTCTCCAAGTCTGACAGCATCTGAGCCAACCGCCCATTCCAAGGAGTCT
CTTGACAGAACACTGGACGCTTTGTCTGAATCCTCTTCAAGTGTGAAGACAGACCTTCCACAAACAGCCG
AGTCTAGGAAAAAGTCGGGCAGGCACGTGACAAGAGTGCTTGTGAAGGACACAGCTGTGCAGACGCCAGA
TCCTGCCTTCACCTACGAGTGGACCAAGGTGGCCAGCATGGCAGCCATGGGGCCTGCCCTGGGAGGCGCC
TACGTGGACCCGACACCCATCGCCAATCATGTTATCAGTGCAGATGCAATAGAAGCCCTGACCGCTTACA
GCCCGGCCGTGCTGGCACTCCATGATGTGCTGAAGCAGCAGCTGAGCCTGACGCAGCAGTTCATCCAGGC
CAGCCGGCACCTGCACGCCTCCCTCCTGCGCTCCCTGGACGCGGACTCCTTCCACTACCACACCCTGGAG
GAAGCCAAAGAGTACATTAGGTGCCACAGACCTGCCCCACTGACCATGGAGGATGCCCTGGAGGAGGTGA
ACAAGGAGCTGTGA

Translation (657 aa):
MASARKASRPMRDVFGDFSDVSLEDSTMEEIRNFQISRNLTKIAPGHSRFLKRNQTLDEKHLLLKENPVL
GSGPRLASCRPPTTASRIRANAALMKLAQLETRIMNRKLQRNLSDTESDSMTADAGLPKRADRILSGGAL
ELASQNTDKTSQNQARELPVTENNAQNAKVSRFLKKKQAPVENISPEAPAGKERTLQTPKQKEPARTFDS
PDSDEEEMKVLLGSLMDSSREKNTNQGFSSANVSEEEERKLFSVPSQLRAFTVPSVELSSAKPSQTSHLP
TSLAADRTLHSTRSRADYPQSHVSSDTASHTPSVSITGAFSNSVSLKMGHVKLVSSPGRSEAETVDEPVS
EGADDSLDEFRINILSLDGLAPAVSENSDLEQEEESAQRQKTAGKIFRAEASTGQDAPRQAQARSWASQG
KAASAEGDESEVSEHLSASSASAIQQDSTSSMQPPSEAPMVNTVSSAYSEDFENSPSLTASEPTAHSKES
LDRTLDALSESSSSVKTDLPQTAESRKKSGRHVTRVLVKDTAVQTPDPAFTYEWTKVASMAAMGPALGGA
YVDPTPIANHVISADAIEALTAYSPAVLALHDVLKQQLSLTQQFIQASRHLHASLLRSLDADSFHYHTLE
EAKEYIRCHRPAPLTMEDALEEVNKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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