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Report for CCDS12336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12336.1 Public Homo sapiens 19 CYP4F2 24 110 108 CCDS HistoryNCBI Gene:8529Re-query CCDS DB by CCDS ID:12336.1Re-query CCDS DB by GeneID:8529See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221700.11 ENSP00000221700.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221700.11Link to Ensembl Protein Viewer:ENSP00000221700.3Re-query CCDS DB by Nucleotide ID:ENST00000221700Re-query CCDS DB by Protein ID:ENSP00000221700
Original member Current member NCBI NM_001082.5 NP_001073.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001082.5Link to Protein Sequence:NP_001073.3Re-query CCDS DB by Nucleotide ID:NM_001082Re-query CCDS DB by Protein ID:NP_001073Link to BLAST:NP_001073.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073.3 520 P78329-1 520 100% 0 0

Chromosomal Locations for CCDS 12336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 15878771 15878936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15879346 15879428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15879604 15879668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15879764 15879897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15885924 15886053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15886242 15886308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15889423 15889693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15890312 15890433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15892309 15892436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15892529 15892582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15895506 15895650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15897414 15897611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGTCCCAGCTGAGCCTGTCCTGGCTGGGCCTCTGGCCAGTGGCAGCATCCCCTTGGCTGCTCCTCCTGC
TGGTCGGGGCCTCCTGGCTCCTGGCCCATGTCCTGGCCTGGACCTACGCCTTCTATGACAACTGCCGCCG
CCTTCGGTGTTTCCCACAACCCCCAAGACGGAACTGGTTTTGGGGACACCAGGGCATGGTCAACCCCACA
GAGGAGGGCATGAGAGTTCTGACTCAGCTGGTGGCCACCTACCCCCAGGGCTTTAAGGTCTGGATGGGAC
CCATCTCCCCCCTCCTCAGTTTGTGCCACCCCGACATCATCCGGTCTGTCATCAACGCCTCAGCTGCCAT
TGCACCAAAGGACAAGTTCTTCTACAGCTTCCTGGAGCCCTGGCTGGGGGATGGGCTCCTGCTGAGTGCT
GGTGACAAGTGGAGCCGCCACCGTCGGATGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATA
TGAAGATTTTCAATGAGAGTGTGAACATCATGCACGCCAAGTGGCAGCTCCTGGCCTCAGAGGGTAGTGC
CTGTTTGGATATGTTTGAGCACATCAGCCTCATGACCTTGGACAGTCTACAGAAATGTGTCTTCAGCTTT
GACAGCCATTGTCAGGAGAAACCCAGTGAATATATTGCCGCCATCTTGGAGCTCAGTGCCCTTGTATCAA
AAAGACACCATGAGATCCTCCTGCATATTGACTTCCTGTATTATCTCACCCCTGATGGGCAGCGTTTCCG
CAGGGCCTGCCGCCTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACTCTCCCTAGC
CAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAATCCAAGACTTTGGACTTCATTGATGTACTCCTGC
TGAGCAAGGATGAAGACGGGAAGAAGTTATCTGATGAGGACATAAGAGCAGAAGCTGACACCTTTATGTT
TGAGGGCCATGACACCACGGCCAGTGGTCTCTCCTGGGTCCTGTACCACCTTGCAAAGCACCCAGAATAC
CAGGAGCGCTGCCGGCAGGAGGTGCAAGAACTTCTGAAGGACCGTGAGCCTAAAGAGATTGAATGGGACG
ACCTGGCCCATTTGCCCTTCCTGACCATGTGCATGAAGGAGAGCCTGCGGCTGCATCCCCCAGTCCCGGT
CATCTCCCGCCATGTCACCCAGGACATTGTGCTCCCAGACGGCCGGGTCATCCCCAAAGGCATTATCTGC
CTCATCAGTGTTTTCGGAACCCATCACAACCCAGCTGTGTGGCCGGACCCTGAGGTCTACGACCCCTTTC
GCTTTGACCCAGAGAACATCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCGGCAGGGCCCAGGAA
CTGCATCGGGCAGACGTTCGCGATGGCGGAGATGAAGGTGGTCCTGGCGCTCACGCTGCTGCGCTTCCGC
GTCCTGCCTGACCACACCGAGCCCCGCAGGAAGCCGGAGCTGGTCCTGCGCGCAGAGGGCGGACTTTGGC
TGCGGGTGGAGCCCCTGAGCTGA

Translation (520 aa):
MSQLSLSWLGLWPVAASPWLLLLLVGASWLLAHVLAWTYAFYDNCRRLRCFPQPPRRNWFWGHQGMVNPT
EEGMRVLTQLVATYPQGFKVWMGPISPLLSLCHPDIIRSVINASAAIAPKDKFFYSFLEPWLGDGLLLSA
GDKWSRHRRMLTPAFHFNILKPYMKIFNESVNIMHAKWQLLASEGSACLDMFEHISLMTLDSLQKCVFSF
DSHCQEKPSEYIAAILELSALVSKRHHEILLHIDFLYYLTPDGQRFRRACRLVHDFTDAVIQERRRTLPS
QGVDDFLQAKAKSKTLDFIDVLLLSKDEDGKKLSDEDIRAEADTFMFEGHDTTASGLSWVLYHLAKHPEY
QERCRQEVQELLKDREPKEIEWDDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVLPDGRVIPKGIIC
LISVFGTHHNPAVWPDPEVYDPFRFDPENIKERSPLAFIPFSAGPRNCIGQTFAMAEMKVVLALTLLRFR
VLPDHTEPRRKPELVLRAEGGLWLRVEPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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