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Report for CCDS12311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12311.1 Public Homo sapiens 19 GIPC1 24 110 108 CCDS HistoryNCBI Gene:10755Re-query CCDS DB by CCDS ID:12311.1Re-query CCDS DB by GeneID:10755See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393028.5 ENSP00000376748.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393028.5Link to Ensembl Protein Viewer:ENSP00000376748.1Re-query CCDS DB by Nucleotide ID:ENST00000393028Re-query CCDS DB by Protein ID:ENSP00000376748
Original member Current member EBI ENST00000591349.5 ENSP00000467077.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591349.5Link to Ensembl Protein Viewer:ENSP00000467077.1Re-query CCDS DB by Nucleotide ID:ENST00000591349Re-query CCDS DB by Protein ID:ENSP00000467077
Original member Current member NCBI NM_202469.3 NP_974198.1 Accepted alive Link to Nucleotide Sequence:NM_202469.3Link to Protein Sequence:NP_974198.1Re-query CCDS DB by Nucleotide ID:NM_202469Re-query CCDS DB by Protein ID:NP_974198Link to BLAST:NP_974198.1
Original member Current member NCBI NM_202494.3 NP_974223.1 Accepted alive Link to Nucleotide Sequence:NM_202494.3Link to Protein Sequence:NP_974223.1Re-query CCDS DB by Nucleotide ID:NM_202494Re-query CCDS DB by Protein ID:NP_974223Link to BLAST:NP_974223.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_974198.1 236 O14908-2 236 100% 0 0
NP_974223.1 236 O14908-2 236 100% 0 0

Chromosomal Locations for CCDS 12311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14478416 14478567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14478684 14478765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14479412 14479524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14480305 14480485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14480593 14480775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGTTCTGCACCCTGAACACCCACAAAGTGGACATGGACAAGCTCCTGGGGGGCCAGATCGGGCTGGAGG
ACTTCATCTTCGCCCACGTGAAGGGGCAGCGCAAGGAGGTGGAGGTGTTCAAGTCGGAGGATGCACTCGG
GCTCACCATCACGGACAACGGGGCTGGCTACGCCTTCATCAAGCGCATCAAGGAGGGCAGCGTGATCGAC
CACATCCACCTCATCAGCGTGGGCGACATGATCGAGGCCATTAACGGGCAGAGCCTGCTGGGCTGCCGGC
ACTACGAGGTGGCCCGGCTGCTCAAGGAGCTGCCCCGAGGCCGTACCTTCACGCTGAAGCTCACGGAGCC
TCGCAAGGCCTTCGACATGATCAGCCAGCGTTCAGCGGGTGGCCGCCCTGGCTCTGGCCCACAACTGGGC
ACTGGCCGAGGGACCCTGCGGCTCCGATCCCGGGGCCCCGCCACGGTGGAGGATCTGCCCTCTGCCTTTG
AAGAGAAGGCCATTGAGAAGGTGGATGACCTGCTGGAGAGTTACATGGGTATCAGGGACACGGAGCTGGC
GGCCACCATGGTGGAGCTGGGAAAGGACAAAAGGAACCCGGATGAGCTGGCCGAGGCCCTGGACGAACGG
CTGGGTGACTTTGCCTTCCCTGACGAGTTCGTCTTTGACGTCTGGGGCGCCATTGGGGACGCCAAGGTCG
GCCGCTACTAG

Translation (236 aa):
MFCTLNTHKVDMDKLLGGQIGLEDFIFAHVKGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVID
HIHLISVGDMIEAINGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLG
TGRGTLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER
LGDFAFPDEFVFDVWGAIGDAKVGRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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