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Report for CCDS12185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12185.1 Public Homo sapiens 19 CLEC4G 24 110 108 CCDS HistoryNCBI Gene:339390Re-query CCDS DB by CCDS ID:12185.1Re-query CCDS DB by GeneID:339390See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12185.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328853.11 ENSP00000327599.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328853.11Link to Ensembl Protein Viewer:ENSP00000327599.4Re-query CCDS DB by Nucleotide ID:ENST00000328853Re-query CCDS DB by Protein ID:ENSP00000327599
Original member Current member NCBI NM_198492.4 NP_940894.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198492.4Link to Protein Sequence:NP_940894.1Re-query CCDS DB by Nucleotide ID:NM_198492Re-query CCDS DB by Protein ID:NP_940894Link to BLAST:NP_940894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940894.1 293 Q6UXB4 293 100% 0 0

Chromosomal Locations for CCDS 12185.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7729366 7729504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7729821 7729936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7730019 7730167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7730351 7730440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7730755 7730859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7731026 7731088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7731266 7731319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7731661 7731771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7732048 7732102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGACACCACCAGGTACAGCAAGTGGGGCGGCAGCTCCGAGGAGGTCCCCGGAGGGCCCTGGGGACGCT
GGGTGCACTGGAGCAGGAGACCCCTCTTCTTGGCCCTGGCTGTCCTGGTCACCACAGTCCTTTGGGCTGT
GATTCTGAGTATCCTATTGTCCAAGGCCTCCACGGAGCGCGCGGCGCTGCTTGACGGCCACGACCTGCTG
AGGACAAACGCCTCGAAGCAGACGGCGGCGCTGGGTGCCCTGAAGGAGGAGGTCGGAGACTGCCACAGCT
GCTGCTCGGGGACGCAGGCGCAGCTGCAGACCACGCGCGCGGAGCTTGGGGAGGCGCAGGCGAAGCTGAT
GGAGCAGGAGAGCGCCCTGCGGGAACTGCGTGAGCGCGTGACCCAGGGCTTGGCTGAAGCCGGCAGGGGC
CGTGAGGACGTCCGCACTGAGCTGTTCCGGGCGCTGGAGGCCGTGAGGCTCCAGAACAACTCCTGCGAGC
CGTGCCCCACGTCGTGGCTGTCCTTCGAGGGCTCCTGCTACTTTTTCTCTGTGCCAAAGACGACGTGGGC
GGCGGCGCAGGATCACTGCGCAGATGCCAGCGCGCACCTGGTGATCGTTGGGGGCCTGGATGAGCAGGGC
TTCCTCACTCGGAACACGCGTGGCCGTGGTTACTGGCTGGGCCTGAGGGCTGTGCGCCATCTGGGCAAGG
TTCAGGGCTACCAGTGGGTGGACGGAGTCTCTCTCAGCTTCAGCCACTGGAACCAGGGAGAGCCCAATGA
CGCTTGGGGGCGCGAGAACTGTGTCATGATGCTGCACACGGGGCTGTGGAACGACGCACCGTGTGACAGC
GAGAAGGACGGCTGGATCTGTGAGAAAAGGCACAACTGCTGA

Translation (293 aa):
MDTTRYSKWGGSSEEVPGGPWGRWVHWSRRPLFLALAVLVTTVLWAVILSILLSKASTERAALLDGHDLL
RTNASKQTAALGALKEEVGDCHSCCSGTQAQLQTTRAELGEAQAKLMEQESALRELRERVTQGLAEAGRG
REDVRTELFRALEAVRLQNNSCEPCPTSWLSFEGSCYFFSVPKTTWAAAQDHCADASAHLVIVGGLDEQG
FLTRNTRGRGYWLGLRAVRHLGKVQGYQWVDGVSLSFSHWNQGEPNDAWGRENCVMMLHTGLWNDAPCDS
EKDGWICEKRHNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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