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Report for CCDS12093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12093.1 Public Homo sapiens 19 SLC39A3 24 110 108 CCDS HistoryNCBI Gene:29985Re-query CCDS DB by CCDS ID:12093.1Re-query CCDS DB by GeneID:29985See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269740.9 ENSP00000269740.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269740.9Link to Ensembl Protein Viewer:ENSP00000269740.3Re-query CCDS DB by Nucleotide ID:ENST00000269740Re-query CCDS DB by Protein ID:ENSP00000269740
Original member Current member NCBI NM_144564.5 NP_653165.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144564.5Link to Protein Sequence:NP_653165.2Re-query CCDS DB by Nucleotide ID:NM_144564Re-query CCDS DB by Protein ID:NP_653165Link to BLAST:NP_653165.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653165.2 314 Q9BRY0-1 314 100% 0 0

Chromosomal Locations for CCDS 12093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 2732751 2733485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 2737048 2737257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGTGAAATTGCTAGTGGCCAAAATCCTGTGCATGGTGGGCGTGTTCTTCTTCATGCTGCTCGGCTCCC
TGCTCCCCGTGAAGATCATCGAGACAGATTTTGAGAAGGCCCATCGCTCGAAAAAGATCCTCTCTCTCTG
CAACACCTTTGGAGGAGGGGTGTTTCTGGCCACGTGCTTCAACGCTCTGCTGCCCGCTGTGAGGGAAAAG
CTCCAGAAGGTCCTGAGCCTCGGCCACATCAGCACCGACTACCCGCTGGCCGAAACCATCCTCCTGCTGG
GCTTCTTCATGACCGTCTTCCTGGAGCAGCTGATCCTGACCTTCCGCAAGGAGAAGCCGTCCTTCATCGA
CCTGGAGACCTTCAACGCCGGATCGGACGTGGGCAGCGACTCGGAGTATGAGAGCCCCTTCATGGGGGGC
GCGCGGGGCCACGCGCTGTACGTGGAGCCCCACGGCCACGGCCCCAGCCTGAGCGTGCAGGGCCTCTCGC
GCGCCAGCCCCGTGCGCCTGCTCAGCCTGGCCTTCGCGCTGTCGGCCCACTCGGTCTTTGAGGGCCTGGC
CCTGGGCCTGCAGGAGGAGGGGGAGAAAGTGGTGAGCCTGTTCGTGGGGGTGGCCGTCCACGAGACACTG
GTGGCCGTGGCCCTGGGCATCAGCATGGCCCGGAGTGCCATGCCCCTGCGGGACGCGGCCAAGCTGGCGG
TCACCGTAAGCGCCATGATCCCCCTGGGCATCGGCCTGGGCCTGGGCATTGAGAGCGCCCAGGGCGTGCC
GGGCAGCGTGGCGTCCGTGCTGCTGCAGGGCCTGGCGGGCGGCACCTTCCTCTTCATCACCTTCCTGGAG
ATCCTGGCCAAGGAGCTGGAGGAGAAGAGTGACCGTCTGCTCAAGGTCCTCTTCCTGGTGCTGGGCTACA
CCGTCCTGGCCGGGATGGTCTTCCTCAAGTGGTGA

Translation (314 aa):
MVKLLVAKILCMVGVFFFMLLGSLLPVKIIETDFEKAHRSKKILSLCNTFGGGVFLATCFNALLPAVREK
LQKVLSLGHISTDYPLAETILLLGFFMTVFLEQLILTFRKEKPSFIDLETFNAGSDVGSDSEYESPFMGG
ARGHALYVEPHGHGPSLSVQGLSRASPVRLLSLAFALSAHSVFEGLALGLQEEGEKVVSLFVGVAVHETL
VAVALGISMARSAMPLRDAAKLAVTVSAMIPLGIGLGLGIESAQGVPGSVASVLLQGLAGGTFLFITFLE
ILAKELEEKSDRLLKVLFLVLGYTVLAGMVFLKW


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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