NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12026.1 Public Homo sapiens 19 SPMAP2 24 110 108 CCDS HistoryNCBI Gene:51298Re-query CCDS DB by CCDS ID:12026.1Re-query CCDS DB by GeneID:51298See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346878.3 ENSP00000264820.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346878.3Link to Ensembl Protein Viewer:ENSP00000264820.3Re-query CCDS DB by Nucleotide ID:ENST00000346878Re-query CCDS DB by Protein ID:ENSP00000264820
Original member Current member NCBI NM_199202.3 NP_954672.1 Accepted alive Link to Nucleotide Sequence:NM_199202.3Link to Protein Sequence:NP_954672.1Re-query CCDS DB by Nucleotide ID:NM_199202Re-query CCDS DB by Protein ID:NP_954672Link to BLAST:NP_954672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954672.1 355 Q9P2T0-2 355 100% 0 0

Chromosomal Locations for CCDS 12026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 362200 362426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 367065 367224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 371205 371322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 372631 372700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 373470 373531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 374299 374421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 375663 375970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGGGGACAGCAGGCGAAGGTCACTCGGGAACCAGCCCAGCTCTGAGGCTGCGGGCAGGTCGGAAAGGG
AGCAGGACGGCGACCCCCGTGGCCTCCAGAGCTCTGTGTACGAGAGCCGGCGGGTCACAGACCCCGAACG
CCAGGACCTGGACAATGCAGAGCTGGGACCAGAAGACCCAGAAGAGGAGCTTCCCCCCGAGGAGGTGGCC
GGGGAGGAGTTCCCGGAGACCCTGGATCCCAAAGAGGCACTTTCTGAGTTGGAGAGAGTCCTGGACAAGG
ACTTGGAAGAGGACATTCCTGAAATCAGCCGGCTGTCCATCAGCCAGAAGCTCCCCAGCACCACCATGAC
CAAAGCAAGGAAGAGGAGGAGGCGGAGGAGGCTCATGGAGCTGGCAGAGCCCAAGATAAACTGGCAAGTC
CTGAAAGACAGGCCCTCTGTGTACTGGACCGAGCGGTTCCTTGAGGACACCACCCTCACCATCACAGTGC
CCGCGGTGTCCCGCCGCGTGGAGGAACTGTCTCGGCCCAAGAGATTCTACCTGGAATATTACAACAACAA
CAGGACGACTCCTGTCTGGCCCATTCCTCGGTCCTCCCTGGAATACAGAGCGTCGAGTCGCCTGAAGGAA
CTGGCCGCCCCGAAGATTCGTGATAACTTCTGGAGCATGCCCATGTCTGAGGTGTCCCAGGTATCCAGGG
CAGCCCAAATGGCAGTCCCCAGCTCGCGGATCCTCCAGTTGTCAAAGCCGAAGGCCCCAGCCACCCTCTT
GGAAGAGTGGGACCCCGTGCCAAAACCCAAGCCACATGTGTCAGACCATAACCGCCTCCTTCACTTGGCC
AGGCCCAAAGCTCAGTCGGACAAGTGCGTTCCTGACCGAGATCCTCGCTGGGAGGTGCTGGATGTCACCA
AGAAGGTGGTGGCCAGCCCCCGGATCATCTCCCTGGCCAAGCCCAAAGTGCGCAAGGGCCTCAACGAGGG
ATACGACAGGCGTCCCCTCGCCTCTATGAGCTTGCCACCCCCAAAAGCATCACCAGAAAAGTGTGATCAA
CCCAGGCCTGGCCTCTAA

Translation (355 aa):
MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVA
GEEFPETLDPKEALSELERVLDKDLEEDIPEISRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQV
LKDRPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNNNRTTPVWPIPRSSLEYRASSRLKE
LAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATLLEEWDPVPKPKPHVSDHNRLLHLA
RPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNEGYDRRPLASMSLPPPKASPEKCDQ
PRPGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH