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Report for CCDS12025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12025.1 Public Homo sapiens 19 SPMAP2 24 110 108 CCDS HistoryNCBI Gene:51298Re-query CCDS DB by CCDS ID:12025.1Re-query CCDS DB by GeneID:51298See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12025.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342640.9 ENSP00000340088.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342640.9Link to Ensembl Protein Viewer:ENSP00000340088.3Re-query CCDS DB by Nucleotide ID:ENST00000342640Re-query CCDS DB by Protein ID:ENSP00000340088
Original member Current member NCBI NM_016585.5 NP_057669.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016585.5Link to Protein Sequence:NP_057669.1Re-query CCDS DB by Nucleotide ID:NM_016585Re-query CCDS DB by Protein ID:NP_057669Link to BLAST:NP_057669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057669.1 379 Q9P2T0-1 379 100% 0 0

Chromosomal Locations for CCDS 12025.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 362200 362426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 367065 367224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 371205 371322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 372631 372700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 373470 373531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 373940 374011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 374299 374421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 375663 375970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGGGGACAGCAGGCGAAGGTCACTCGGGAACCAGCCCAGCTCTGAGGCTGCGGGCAGGTCGGAAAGGG
AG
CAGGACGGCGACCCCCGTGGCCTCCAGAGCTCTGTGTACGAGAGCCGGCGGGTCACAGACCCCGAACG
C
CAGGACCTGGACAATGCAGAGCTGGGACCAGAAGACCCAGAAGAGGAGCTTCCCCCCGAGGAGGTGGCC
GGG
GAGGAGTTCCCGGAGACCCTGGATCCCAAAGAGGCACTTTCTGAGTTGGAGAGAGTCCTGGACAAGG
AC
TTGGAAGAGGACATTCCTGAAATCAGCCGGCTGTCCATCAGCCAGAAGCTCCCCAGCACCACCATGAC
C
AAAGCAAGGAAGAGGAGGAGGCGGAGGAGGCTCATGGAGCTGGCAGAGCCCAAGATAAACTGGCAAGTC
CTG
AAAGACAGGAAGGGACGCTGTGGTAAGGGGTATGCCTGGATCTCCCCATGTAAGATGAGCTTGCACT
TC
TGTCTCTGCTGGCCCTCTGTGTACTGGACCGAGCGGTTCCTTGAGGACACCACCCTCACCATCACAGT
G
CCCGCGGTGTCCCGCCGCGTGGAGGAACTGTCTCGGCCCAAGAGATTCTACCTGGAATATTACAACAAC
AAC
AGGACGACTCCTGTCTGGCCCATTCCTCGGTCCTCCCTGGAATACAGAGCGTCGAGTCGCCTGAAGG
AA
CTGGCCGCCCCGAAGATTCGTGATAACTTCTGGAGCATGCCCATGTCTGAGGTGTCCCAGGTATCCAG
G
GCAGCCCAAATGGCAGTCCCCAGCTCGCGGATCCTCCAGTTGTCAAAGCCGAAGGCCCCAGCCACCCTC
TTG
GAAGAGTGGGACCCCGTGCCAAAACCCAAGCCACATGTGTCAGACCATAACCGCCTCCTTCACTTGG
CC
AGGCCCAAAGCTCAGTCGGACAAGTGCGTTCCTGACCGAGATCCTCGCTGGGAGGTGCTGGATGTCAC
C
AAGAAGGTGGTGGCCAGCCCCCGGATCATCTCCCTGGCCAAGCCCAAAGTGCGCAAGGGCCTCAACGAG
GGA
TACGACAGGCGTCCCCTCGCCTCTATGAGCTTGCCACCCCCAAAAGCATCACCAGAAAAGTGTGATC
AA
CCCAGGCCTGGCCTCTAA


Translation (379 aa):
MGDSRRRSLGNQPSSEAAGRSEREQDGDPRGLQSSVYESRRVTDPERQDLDNAELGPEDPEEELPPEEVA
G
EEFPETLDPKEALSELERVLDKDLEEDIPEI
SRLSISQKLPSTTMTKARKRRRRRRLMELAEPKINWQV
L
KD
RKGRCGKGYAWISPCKMSLHFCLCWPSVYWTERFLEDTTLTITVPAVSRRVEELSRPKRFYLEYYNN
N
RTTPVWPIPRSSLEYRASSRLKELAAPKIRDNFWSMPMSEVSQVSRAAQMAVPSSRILQLSKPKAPATL
L
EEWDPVPKPKPHVSDHNRLLHLA
RPKAQSDKCVPDRDPRWEVLDVTKKVVASPRIISLAKPKVRKGLNE
G
YDRRPLASMSLPPPKASPEKCDQPRPGL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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