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Report for CCDS11973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11973.1 Public Homo sapiens 18 CPLX4 24 110 108 CCDS HistoryNCBI Gene:339302Re-query CCDS DB by CCDS ID:11973.1Re-query CCDS DB by GeneID:339302See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11973.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299721.3 ENSP00000299721.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299721.3Link to Ensembl Protein Viewer:ENSP00000299721.3Re-query CCDS DB by Nucleotide ID:ENST00000299721Re-query CCDS DB by Protein ID:ENSP00000299721
Original member Current member NCBI NM_181654.4 NP_857637.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181654.4Link to Protein Sequence:NP_857637.1Re-query CCDS DB by Nucleotide ID:NM_181654Re-query CCDS DB by Protein ID:NP_857637Link to BLAST:NP_857637.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_857637.1 160 Q7Z7G2 160 100% 0 0

Chromosomal Locations for CCDS 11973.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 59296698 59296925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59312685 59312772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59318296 59318462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCTTTCCTTATGAAAAGTATGATAAGTAACCAGGTAAAGAATTTAGGATTTGGTGGTGGGTCTGAAG
AAAATAAAGAAGAAGGAGGTGCATCTGATCCTGCAGCAGCTCAAGGGATGACTAGAGAGGAGTATGAGGA
GTATCAAAAGCAAATGATTGAGGAGAAGATGGAAAGAGATGCTGCATTTACACAGAAAAAGGCAGAAAGG
GCATGCCTCAGAGTTCATCTCAGAGAAAAATACAGGCTCCCAAAGAGTGAAATGGATGAGAATCAAATCC
AGATGGCTGGAGATGATGTGGATTTACCTGAAGATCTCCGGAAAATGGTAGATGAAGATCAAGAAGAGGA
AGAAGATAAAGATTCTATTCTTGGGCAGATACAGAATCTCCAGAACATGGACTTGGATACCATAAAAGAA
AAAGCCCAGGCCACCTTCACTGAAATCAAGCAGACAGCGGAGCAGAAGTGTTCCGTGATGTGA

Translation (160 aa):
MAFLMKSMISNQVKNLGFGGGSEENKEEGGASDPAAAQGMTREEYEEYQKQMIEEKMERDAAFTQKKAER
ACLRVHLREKYRLPKSEMDENQIQMAGDDVDLPEDLRKMVDEDQEEEEDKDSILGQIQNLQNMDLDTIKE
KAQATFTEIKQTAEQKCSVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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