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Report for CCDS11555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11555.1 Public Homo sapiens 17 DLX4 24 110 108 CCDS HistoryNCBI Gene:1748Re-query CCDS DB by CCDS ID:11555.1Re-query CCDS DB by GeneID:1748See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240306.5 ENSP00000240306.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240306.5Link to Ensembl Protein Viewer:ENSP00000240306.3Re-query CCDS DB by Nucleotide ID:ENST00000240306Re-query CCDS DB by Protein ID:ENSP00000240306
Original member Current member NCBI NM_138281.3 NP_612138.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138281.3Link to Protein Sequence:NP_612138.1Re-query CCDS DB by Nucleotide ID:NM_138281Re-query CCDS DB by Protein ID:NP_612138Link to BLAST:NP_612138.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612138.1 240 Q92988-1 240 100% 0 0

Chromosomal Locations for CCDS 11555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49969469 49969751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49973073 49973269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49973701 49973943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGACCTCTTTGCCCTGCCCCCTCCCCGGCCGGGACGCCTCCAAAGCTGTCTTCCCAGACCTCGCCCCTG
TCCCGTCGGTAGCGGCTGCCTACCCGCTTGGCTTGTCCCCTACAACCGCAGCCTCCCCCAATTTGTCCTA
CTCCAGGCCGTATGGCCACCTCCTGTCTTACCCCTACACCGAGCCAGCGAACCCCGGAGACTCCTACCTG
TCCTGCCAGCAACCCGCGGCGCTCTCTCAGCCCCTCTGCGGACCTGCAGAGCACCCTCAGGAACTCGAGG
CAGACTCGGAGAAGCCGCGGCTGTCCCCGGAACCCTCCGAGCGGCGCCCTCAGGCCCCCGCCAAAAAGCT
CCGCAAGCCGAGGACCATCTACTCCAGCCTGCAGCTGCAGCACCTAAACCAGCGTTTCCAGCACACGCAG
TACCTGGCGCTGCCCGAGAGGGCCCAGCTGGCAGCGCAGCTCGGCCTCACCCAGACCCAGGTAAAGATCT
GGTTTCAGAACAAACGCTCCAAGTATAAGAAGCTCCTGAAGCAGAATTCTGGGGGGCAGGAAGGGGACTT
CCCTGGGAGGACCTTCTCTGTGTCTCCCTGCTCCCCACCCCTCCCCTCCCTCTGGGATCTACCCAAGGCA
GGGACCCTGCCCACCAGTGGCTATGGCAACAGCTTTGGAGCCTGGTATCAGCATCACTCCTCAGATGTCC
TGGCTTCGCCTCAGATGATGTGA

Translation (240 aa):
MTSLPCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTEPANPGDSYL
SCQQPAALSQPLCGPAEHPQELEADSEKPRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQ
YLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDLPKA
GTLPTSGYGNSFGAWYQHHSSDVLASPQMM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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