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Report for CCDS11340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11340.1 Public Homo sapiens 17 PPP1R1B 24 110 108 CCDS HistoryNCBI Gene:84152Re-query CCDS DB by CCDS ID:11340.1Re-query CCDS DB by GeneID:84152See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394265.5 ENSP00000377808.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394265.5Link to Ensembl Protein Viewer:ENSP00000377808.1Re-query CCDS DB by Nucleotide ID:ENST00000394265Re-query CCDS DB by Protein ID:ENSP00000377808
Original member Current member EBI ENST00000394267.2 ENSP00000377810.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394267.2Link to Ensembl Protein Viewer:ENSP00000377810.2Re-query CCDS DB by Nucleotide ID:ENST00000394267Re-query CCDS DB by Protein ID:ENSP00000377810
Original member Current member NCBI NM_001242464.2 NP_001229393.1 Accepted alive Link to Nucleotide Sequence:NM_001242464.2Link to Protein Sequence:NP_001229393.1Re-query CCDS DB by Nucleotide ID:NM_001242464Re-query CCDS DB by Protein ID:NP_001229393Link to BLAST:NP_001229393.1
Original member Current member NCBI NM_181505.4 NP_852606.1 Accepted alive Link to Nucleotide Sequence:NM_181505.4Link to Protein Sequence:NP_852606.1Re-query CCDS DB by Nucleotide ID:NM_181505Re-query CCDS DB by Protein ID:NP_852606Link to BLAST:NP_852606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229393.1 168 Q9UD71-2 168 100% 0 0
NP_852606.1 168 Q9UD71-2 168 100% 0 0

Chromosomal Locations for CCDS 11340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39629197 39629230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39629540 39629562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39629972 39630047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39633883 39634086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39635607 39635726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39635816 39635865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGCTGTTCCGGCTCTCAGAGCACTCCTCACCAGAGGAGGAAGCCTCCCCCCACCAGAGAGCCTCAGGAG
AGGGGCACCATCTCAAGTCGAAGAGACCCAACCCCTGTGCCTACACACCACCTTCGCTGAAAGCTGTGCA
GCGCATTGCTGAGTCTCACCTGCAGTCTATCAGCAATTTGAATGAGAACCAGGCCTCAGAGGAGGAGGAT
GAGCTGGGGGAGCTTCGGGAGCTGGGTTATCCAAGAGAGGAAGATGAGGAGGAAGAGGAGGATGATGAAG
AAGAGGAAGAAGAAGAGGACAGCCAGGCTGAAGTCCTGAAGGTCATCAGGCAGTCTGCTGGGCAAAAGAC
AACCTGTGGCCAGGGTCTGGAAGGGCCCTGGGAGCGCCCACCCCCTCTGGATGAGTCCGAGAGAGATGGA
GGCTCTGAGGACCAAGTGGAAGACCCAGCACTAAGTGAGCCTGGGGAGGAACCTCAGCGCCCTTCCCCCT
CTGAGCCTGGCACATAG

Translation (168 aa):
MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEEED
ELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLDESERDG
GSEDQVEDPALSEPGEEPQRPSPSEPGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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