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Report for CCDS11330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11330.1 Public Homo sapiens 17 RPL23 24 110 108 CCDS HistoryNCBI Gene:9349Re-query CCDS DB by CCDS ID:11330.1Re-query CCDS DB by GeneID:9349See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394332.5 ENSP00000377865.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394332.5Link to Ensembl Protein Viewer:ENSP00000377865.1Re-query CCDS DB by Nucleotide ID:ENST00000394332Re-query CCDS DB by Protein ID:ENSP00000377865
Original member Current member EBI ENST00000479035.7 ENSP00000420311.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000479035.7Link to Ensembl Protein Viewer:ENSP00000420311.2Re-query CCDS DB by Nucleotide ID:ENST00000479035Re-query CCDS DB by Protein ID:ENSP00000420311
Original member Current member NCBI NM_000978.4 NP_000969.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000978.4Link to Protein Sequence:NP_000969.1Re-query CCDS DB by Nucleotide ID:NM_000978Re-query CCDS DB by Protein ID:NP_000969Link to BLAST:NP_000969.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000969.1 140 P62829 140 100% 0 0

Chromosomal Locations for CCDS 11330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38850132 38850214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38850362 38850475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38852604 38852732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38853022 38853105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38853698 38853710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTAGGAG
CTGTAATCAATTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCCGTGAAGGGGATCAAGGG
ACGGCTGAACAGACTTCCCGCTGCTGGTGTGGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCA
GAGCTCAGAAAAAAGGTACATCCAGCAGTGGTCATTCGACAACGAAAGTCATACCGTAGAAAAGATGGCG
TGTTTCTTTATTTTGAAGATAATGCAGGAGTCATAGTGAACAATAAAGGCGAGATGAAAGGTTCTGCCAT
TACAGGACCAGTAGCAAAGGAGTGTGCAGACTTGTGGCCCCGGATTGCATCCAATGCTGGCAGCATTGCA
TGA

Translation (140 aa):
MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP
ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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