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Report for CCDS1133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1133.1 Public Homo sapiens 1 SLC25A44 24 110 108 CCDS HistoryNCBI Gene:9673Re-query CCDS DB by CCDS ID:1133.1Re-query CCDS DB by GeneID:9673See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1133.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359511.5 ENSP00000352497.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359511.5Link to Ensembl Protein Viewer:ENSP00000352497.4Re-query CCDS DB by Nucleotide ID:ENST00000359511Re-query CCDS DB by Protein ID:ENSP00000352497
Original member Current member NCBI NM_001377386.1 NP_001364315.1 Accepted alive Link to Nucleotide Sequence:NM_001377386.1Link to Protein Sequence:NP_001364315.1Re-query CCDS DB by Nucleotide ID:NM_001377386Re-query CCDS DB by Protein ID:NP_001364315Link to BLAST:NP_001364315.1
Original member Current member NCBI NM_001377387.1 NP_001364316.1 Accepted alive Link to Nucleotide Sequence:NM_001377387.1Link to Protein Sequence:NP_001364316.1Re-query CCDS DB by Nucleotide ID:NM_001377387Re-query CCDS DB by Protein ID:NP_001364316Link to BLAST:NP_001364316.1
Original member Current member NCBI NM_001377388.1 NP_001364317.1 Accepted alive Link to Nucleotide Sequence:NM_001377388.1Link to Protein Sequence:NP_001364317.1Re-query CCDS DB by Nucleotide ID:NM_001377388Re-query CCDS DB by Protein ID:NP_001364317Link to BLAST:NP_001364317.1
Original member Current member NCBI NM_014655.4 NP_055470.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014655.4Link to Protein Sequence:NP_055470.1Re-query CCDS DB by Nucleotide ID:NM_014655Re-query CCDS DB by Protein ID:NP_055470Link to BLAST:NP_055470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364315.1 314 Q96H78 314 100% 0 0
NP_001364316.1 314 Q96H78 314 100% 0 0
NP_001364317.1 314 Q96H78 314 100% 0 0
NP_055470.1 314 Q96H78 314 100% 0 0

Chromosomal Locations for CCDS 1133.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156199848 156200472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156207886 156208013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156210240 156210431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGGACAAACGCAACATCCAGATCATCGAGTGGGAACACCTGGACAAGAAGAAGTTCTACGTGTTTG
GTGTGGCAATGACAATGATGATCCGTGTCAGTGTCTACCCATTCACCCTCATCCGCACCCGGTTGCAAGT
TCAGAAGGGGAAGAGCCTCTACCATGGGACCTTCGATGCCTTCATCAAGATCCTGCGAGCAGATGGTATC
ACTGGCCTCTACCGAGGGTTCCTGGTCAATACCTTCACCCTCATCTCTGGCCAGTGTTATGTCACCACTT
ATGAGCTCACCCGGAAGTTTGTAGCTGACTACAGCCAGAGTAACACAGTCAAATCACTGGTGGCTGGTGG
CTCAGCCTCCCTTGTGGCCCAGAGCATCACAGTGCCCATTGATGTAGTCTCCCAGCACCTGATGATGCAA
CGCAAGGGTGAGAAAATGGGCCGCTTTCAGGTGCGGGGGAACCCAGAGGGACAAGGGGTAGTTGCCTTTG
GCCAAACCAAGGACATCATCAGGCAGATCCTGCAGGCTGATGGACTTCGCGGCTTCTATCGAGGCTATGT
GGCTTCACTGCTTACCTATATCCCAAACAGTGCTGTCTGGTGGCCCTTCTATCACTTCTATGCAGAGCAG
CTCTCCTACCTGTGTCCTAAGGAGTGCCCTCACATTGTCTTTCAAGCTGTCTCGGGGCCCCTGGCTGCAG
CCACTGCCTCCATCCTCACCAATCCCATGGATGTCATACGAACCCGTGTGCAGGTTGAGGGCAAGAACTC
CATCATCCTGACCTTCAGACAGCTGATGGCAGAAGAAGGGCCTTGGGGCCTCATGAAGGGCCTCTCGGCC
AGAATCATCTCAGCCACACCTTCCACCATTGTCATTGTGGTGGGCTATGAGAGCCTCAAGAAACTCAGCC
TCCGACCTGAGCTGGTGGACTCGAGACACTGGTAA

Translation (314 aa):
MEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLIRTRLQVQKGKSLYHGTFDAFIKILRADGI
TGLYRGFLVNTFTLISGQCYVTTYELTRKFVADYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQ
RKGEKMGRFQVRGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQ
LSYLCPKECPHIVFQAVSGPLAAATASILTNPMDVIRTRVQVEGKNSIILTFRQLMAEEGPWGLMKGLSA
RIISATPSTIVIVVGYESLKKLSLRPELVDSRHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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