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Report for CCDS11231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11231.1 Public Homo sapiens 17 SLC13A2 24 110 108 CCDS HistoryNCBI Gene:9058Re-query CCDS DB by CCDS ID:11231.1Re-query CCDS DB by GeneID:9058See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314669.10 ENSP00000316202.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314669.10Link to Ensembl Protein Viewer:ENSP00000316202.6Re-query CCDS DB by Nucleotide ID:ENST00000314669Re-query CCDS DB by Protein ID:ENSP00000316202
Original member Current member NCBI NM_003984.4 NP_003975.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003984.4Link to Protein Sequence:NP_003975.1Re-query CCDS DB by Nucleotide ID:NM_003984Re-query CCDS DB by Protein ID:NP_003975Link to BLAST:NP_003975.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003975.1 592 Q13183-1 592 100% 0 0

Chromosomal Locations for CCDS 11231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28473713 28473814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28489214 28489342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28490454 28490590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28490701 28490906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28491437 28491617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28491730 28491852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28493571 28493789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28494017 28494105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28494391 28494512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28495655 28495816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28496450 28496587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28497099 28497269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCCACCTGCTGGCAGGCCCTGTGGGCCTATCGCTCCTACCTGATCGTGTTCTTCGTGCCCATTCTCC
TGCTGCCTCTGCCCATCCTCGTCCCCAGTAAGGAGGCCTACTGCGCGTATGCCATCATCCTCATGGCGCT
CTTCTGGTGCACTGAGGCCCTGCCCCTGGCCGTCACTGCCCTCTTCCCCTTAATCCTGTTCCCTATGATG
GGCATCGTGGATGCCTCTGAGGTTGCCGTCGAGTATCTTAAGGACTCCAACCTCCTGTTCTTCGGGGGGC
TGCTGGTGGCCATCGCGGTGGAACACTGGAACCTGCATAAACGCATCGCCCTCCGTGTCCTCCTCATCGT
TGGGGTGCGGCCTGCCCCGCTAATCCTGGGCTTCATGCTGGTCACGGCCTTCCTGTCCATGTGGATCAGC
AACACGGCCACCTCAGCCATGATGGTGCCCATCGCACATGCCGTCCTGGACCAGCTGCACAGCTCGCAAG
CCAGCAGCAACGTCGAGGAGGGCAGCAACAACCCCACCTTCGAGCTCCAGGAACCAAGTCCCCAGAAGGA
GGTGACCAAGCTTGATAATGGGCAGGCCCTCCCTGTCACGTCTGCCTCTTCGGAGGGGAGGGCACATCTC
AGCCAGAAGCATCTCCACCTCACCCAGTGCATGAGCCTGTGCGTGTGCTACTCCGCCAGCATCGGGGGCA
TCGCCACGCTGACTGGCACCGCACCCAACCTGGTGCTGCAAGGCCAGATCAACTCGCTCTTCCCCCAAAA
CGGCAACGTGGTGAACTTCGCCTCCTGGTTCAGCTTCGCCTTCCCCACCATGGTCATCTTGCTGCTGCTG
GCCTGGTTGTGGCTGCAGATCCTCTTCCTGGGCTTCAACTTCCGGAAGAACTTTGGCATTGGGGAAAAGA
TGCAGGAGCAACAGCAGGCAGCCTACTGCGTCATCCAGACCGAGCACAGGCTGCTGGGCCCCATGACCTT
TGCAGAAAAGGCCATCAGCATCCTATTCGTCATCCTGGTGCTGCTCTGGTTCACCCGGGAGCCGGGCTTT
TTTCTTGGCTGGGGCAATTTGGCTTTTCCCAATGCCAAGGGGGAGAGCATGGTGTCCGATGGGACAGTGG
CCATCTTCATCGGCATAATTATGTTCATCATACCCTCCAAGTTCCCAGGGCTGACCCAGGACCCAGAAAA
CCCAGGGAAGCTGAAGGCCCCTCTTGGCCTCCTCGACTGGAAGACGGTGAACCAGAAGATGCCGTGGAAT
ATCGTGTTATTGCTGGGTGGTGGCTATGCCCTGGCCAAGGGCAGTGAGCGATCGGGCCTGTCAGAGTGGC
TGGGAAACAAGCTGACCCCACTGCAGAGTGTGCCAGCTCCAGCCATTGCCATCATCCTCTCCCTCCTGGT
GGCCACCTTCACCGAGTGCACTAGCAACGTGGCCACCACTACGATCTTCCTGCCCATCCTAGCCTCCATG
GCCCAGGCCATCTGCCTCCACCCTCTCTACGTCATGCTCCCCTGCACTCTGGCCACCTCCCTGGCCTTCA
TGTTGCCTGTGGCCACCCCGCCCAATGCCATCGTCTTCTCTTTCGGGGACCTCAAAGTGTTGGATATGGC
CCGGGCAGGATTCCTCCTCAACATCATTGGAGTCCTGATCATCGCACTGGCCATCAACAGCTGGGGCATC
CCCCTCTTCAGCCTGCACTCTTTCCCCTCCTGGGCACAGTCCAACACCACAGCCCAGTGCCTGCCAAGCC
TGGCCAACACCACCACACCAAGCCCCTAG

Translation (592 aa):
MATCWQALWAYRSYLIVFFVPILLLPLPILVPSKEAYCAYAIILMALFWCTEALPLAVTALFPLILFPMM
GIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRVLLIVGVRPAPLILGFMLVTAFLSMWIS
NTATSAMMVPIAHAVLDQLHSSQASSNVEEGSNNPTFELQEPSPQKEVTKLDNGQALPVTSASSEGRAHL
SQKHLHLTQCMSLCVCYSASIGGIATLTGTAPNLVLQGQINSLFPQNGNVVNFASWFSFAFPTMVILLLL
AWLWLQILFLGFNFRKNFGIGEKMQEQQQAAYCVIQTEHRLLGPMTFAEKAISILFVILVLLWFTREPGF
FLGWGNLAFPNAKGESMVSDGTVAIFIGIIMFIIPSKFPGLTQDPENPGKLKAPLGLLDWKTVNQKMPWN
IVLLLGGGYALAKGSERSGLSEWLGNKLTPLQSVPAPAIAIILSLLVATFTECTSNVATTTIFLPILASM
AQAICLHPLYVMLPCTLATSLAFMLPVATPPNAIVFSFGDLKVLDMARAGFLLNIIGVLIIALAINSWGI
PLFSLHSFPSWAQSNTTAQCLPSLANTTTPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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