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Report for CCDS10927.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10927.3 Public Homo sapiens 16 CLEC3A 24 110 108 CCDS HistoryNCBI Gene:10143Re-query CCDS DB by CCDS ID:10927.3Re-query CCDS DB by GeneID:10143See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 10927.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10927.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299642.10 ENSP00000299642.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299642.10Link to Ensembl Protein Viewer:ENSP00000299642.5Re-query CCDS DB by Nucleotide ID:ENST00000299642Re-query CCDS DB by Protein ID:ENSP00000299642
Original member Current member NCBI NM_005752.6 NP_005743.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005752.6Link to Protein Sequence:NP_005743.5Re-query CCDS DB by Nucleotide ID:NM_005752Re-query CCDS DB by Protein ID:NP_005743Link to BLAST:NP_005743.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005743.5 197 O75596 197 100% 0 0

Chromosomal Locations for CCDS 10927.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 78022627 78022741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78028107 78028190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78030447 78030841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGCAAAGAATGGACTTGTAATTTGCATCCTGGTGATCACCTTACTCCTGGACCAGACCACCAGCCACA
CATCCAGATTAAAAGCCAGGAAGCACAGCAAACGTCGAGTGAGAGACAAGGATGGAGATCTGAAGACTCA
AATTGAAAAGCTCTGGACAGAAGTCAATGCCTTGAAGGAAATTCAAGCCCTGCAGACAGTCTGTCTCCGA
GGCACTAAAGTTCACAAGAAATGCTACCTTGCTTCAGAAGGTTTGAAGCATTTCCATGAGGCCAATGAAG
ACTGCATTTCCAAAGGAGGAATCCTGGTTATCCCCAGGAACTCCGACGAAATCAACGCCCTCCAAGACTA
TGGTAAAAGGAGCCTGCCAGGTGTCAATGACTTTTGGCTGGGCATCAATGACATGGTCACGGAAGGCAAG
TTTGTTGACGTCAACGGAATCGCTATCTCCTTCCTCAACTGGGACCGTGCACAGCCTAACGGTGGCAAGC
GAGAAAACTGTGTCCTGTTCTCCCAATCAGCTCAGGGCAAGTGGAGTGATGAGGCCTGTCGCAGCAGCAA
GAGATACATATGCGAGTTCACCATCCCTCAATAG

Translation (197 aa):
MAKNGLVICILVITLLLDQTTSHTSRLKARKHSKRRVRDKDGDLKTQIEKLWTEVNALKEIQALQTVCLR
GTKVHKKCYLASEGLKHFHEANEDCISKGGILVIPRNSDEINALQDYGKRSLPGVNDFWLGINDMVTEGK
FVDVNGIAISFLNWDRAQPNGGKRENCVLFSQSAQGKWSDEACRSSKRYICEFTIPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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