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Report for CCDS10902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10902.1 Public Homo sapiens 16 CHST4 24 110 108 CCDS HistoryNCBI Gene:10164Re-query CCDS DB by CCDS ID:10902.1Re-query CCDS DB by GeneID:10164See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10902.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338482.5 ENSP00000341206.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338482.5Link to Ensembl Protein Viewer:ENSP00000341206.5Re-query CCDS DB by Nucleotide ID:ENST00000338482Re-query CCDS DB by Protein ID:ENSP00000341206
Original member Current member EBI ENST00000539698.4 ENSP00000441204.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539698.4Link to Ensembl Protein Viewer:ENSP00000441204.3Re-query CCDS DB by Nucleotide ID:ENST00000539698Re-query CCDS DB by Protein ID:ENSP00000441204
Original member Current member NCBI NM_001166395.2 NP_001159867.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166395.2Link to Protein Sequence:NP_001159867.1Re-query CCDS DB by Nucleotide ID:NM_001166395Re-query CCDS DB by Protein ID:NP_001159867Link to BLAST:NP_001159867.1
Original member Current member NCBI NM_005769.2 NP_005760.1 Accepted alive Link to Nucleotide Sequence:NM_005769.2Link to Protein Sequence:NP_005760.1Re-query CCDS DB by Nucleotide ID:NM_005769Re-query CCDS DB by Protein ID:NP_005760Link to BLAST:NP_005760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159867.1 386 Q8NCG5 386 100% 0 0
NP_005760.1 386 Q8NCG5 386 100% 0 0

Chromosomal Locations for CCDS 10902.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 71536678 71537838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGCTACTGCCTAAAAAAATGAAGCTCCTGCTGTTTCTGGTTTCCCAGATGGCCATCTTGGCTCTATTCT
TCCACATGTACAGCCACAACATCAGCTCCCTGTCTATGAAGGCACAGCCCGAGCGCATGCACGTGCTGGT
TCTGTCTTCCTGGCGCTCTGGCTCTTCTTTTGTGGGGCAGCTTTTTGGGCAGCACCCAGATGTTTTCTAC
CTGATGGAGCCCGCCTGGCACGTGTGGATGACCTTCAAGCAGAGCACCGCCTGGATGCTGCACATGGCTG
TGCGGGATCTGATACGGGCCGTCTTCTTGTGCGACATGAGCGTCTTTGATGCCTACATGGAACCTGGTCC
CCGGAGACAGTCCAGCCTCTTTCAGTGGGAGAACAGCCGGGCCCTGTGTTCTGCACCTGCCTGTGACATC
ATCCCACAAGATGAAATCATCCCCCGGGCTCACTGCAGGCTCCTGTGCAGTCAACAGCCCTTTGAGGTGG
TGGAGAAGGCCTGCCGCTCCTACAGCCACGTGGTGCTCAAGGAGGTGCGCTTCTTCAACCTGCAGTCCCT
CTACCCGCTGCTGAAAGACCCCTCCCTCAACCTGCATATCGTGCACCTGGTCCGGGACCCCCGGGCCGTG
TTCCGTTCCCGAGAACGCACAAAGGGAGATCTCATGATTGACAGTCGCATTGTGATGGGGCAGCATGAGC
AAAAACTCAAGAAGGAGGACCAACCCTACTATGTGATGCAGGTCATCTGCCAAAGCCAGCTGGAGATCTA
CAAGACCATCCAGTCCTTGCCCAAGGCCCTGCAGGAACGCTACCTGCTTGTGCGCTATGAGGACCTGGCT
CGAGCCCCTGTGGCCCAGACTTCCCGAATGTATGAATTCGTGGGATTGGAATTCTTGCCCCATCTTCAGA
CCTGGGTGCATAACATCACCCGAGGCAAGGGCATGGGTGACCACGCTTTCCACACAAATGCCAGGGATGC
CCTTAATGTCTCCCAGGCTTGGCGCTGGTCTTTGCCCTATGAAAAGGTTTCTCGACTTCAGAAAGCCTGT
GGCGATGCCATGAATTTGCTGGGCTACCGCCACGTCAGATCTGAACAAGAACAGAGAAACCTGTTGCTGG
ATCTTCTGTCTACCTGGACTGTCCCTGAGCAAATCCACTAA

Translation (386 aa):
MLLPKKMKLLLFLVSQMAILALFFHMYSHNISSLSMKAQPERMHVLVLSSWRSGSSFVGQLFGQHPDVFY
LMEPAWHVWMTFKQSTAWMLHMAVRDLIRAVFLCDMSVFDAYMEPGPRRQSSLFQWENSRALCSAPACDI
IPQDEIIPRAHCRLLCSQQPFEVVEKACRSYSHVVLKEVRFFNLQSLYPLLKDPSLNLHIVHLVRDPRAV
FRSRERTKGDLMIDSRIVMGQHEQKLKKEDQPYYVMQVICQSQLEIYKTIQSLPKALQERYLLVRYEDLA
RAPVAQTSRMYEFVGLEFLPHLQTWVHNITRGKGMGDHAFHTNARDALNVSQAWRWSLPYEKVSRLQKAC
GDAMNLLGYRHVRSEQEQRNLLLDLLSTWTVPEQIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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