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Report for CCDS109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
109.1 Public Homo sapiens 1 RBP7 24 110 108 CCDS HistoryNCBI Gene:116362Re-query CCDS DB by CCDS ID:109.1Re-query CCDS DB by GeneID:116362See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 109.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294435.8 ENSP00000294435.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294435.8Link to Ensembl Protein Viewer:ENSP00000294435.7Re-query CCDS DB by Nucleotide ID:ENST00000294435Re-query CCDS DB by Protein ID:ENSP00000294435
Original member Current member NCBI NM_052960.3 NP_443192.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052960.3Link to Protein Sequence:NP_443192.1Re-query CCDS DB by Nucleotide ID:NM_052960Re-query CCDS DB by Protein ID:NP_443192Link to BLAST:NP_443192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443192.1 134 Q96R05 134 100% 0 0

Chromosomal Locations for CCDS 109.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9997259 9997331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10007570 10007748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10008173 10008274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 10015782 10015832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGCCCGCCGACCTCAGCGGTACTTGGACCCTGCTCAGCAGCGACAACTTCGAGGGCTACATGCTGGCCC
TAGGTATTGACTTTGCCACTCGTAAAATAGCCAAGTTGCTGAAGCCACAGAAAGTGATTGAGCAGAATGG
GGATTCTTTTACCATCCACACGAACAGCAGCCTAAGGAACTACTTTGTGAAATTTAAAGTTGGAGAAGAA
TTTGATGAAGATAACAGAGGCCTGGACAACAGAAAATGCAAGAGTTTGGTTATCTGGGACAATGACAGGC
TCACCTGTATCCAGAAGGGAGAAAAGAAGAACAGAGGCTGGACCCATTGGATCGAAGGAGACAAACTCCA
CCTGGAAATGTTCTGTGAAGGTCAAGTGTGCAAACAGACATTCCAGAGAGCCTGA

Translation (134 aa):
MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYFVKFKVGEE
FDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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