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Report for CCDS10850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10850.1 Public Homo sapiens 16 NRN1L 24 110 108 CCDS HistoryNCBI Gene:123904Re-query CCDS DB by CCDS ID:10850.1Re-query CCDS DB by GeneID:123904See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10850.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339176.8 ENSP00000342411.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339176.8Link to Ensembl Protein Viewer:ENSP00000342411.3Re-query CCDS DB by Nucleotide ID:ENST00000339176Re-query CCDS DB by Protein ID:ENSP00000342411
Original member Current member NCBI NM_198443.2 NP_940845.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198443.2Link to Protein Sequence:NP_940845.1Re-query CCDS DB by Nucleotide ID:NM_198443Re-query CCDS DB by Protein ID:NP_940845Link to BLAST:NP_940845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940845.1 165 Q496H8 165 100% 0 0

Chromosomal Locations for CCDS 10850.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67884904 67884982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67885722 67885854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67885974 67886259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGATGCGCTGCTGCCGCCGCCGCTGCTGCTGCCGGCAACCACCCCATGCCCTGAGGCCGTTGCTGTTGC
TGCCCCTCGTCCTTTTACCTCCCCTGGCAGCAGCTGCAGCGGGCCCAAACCGATGTGACACCATATACCA
GGGCTTCGCCGAGTGTCTCATCCGCTTGGGGGACAGCATGGGCCGCGGAGGCGAGCTGGAGACCATCTGC
AGGTCTTGGAATGACTTCCATGCCTGTGCCTCTCAGGTCCTGTCAGGCTGTCCGGAGGAGGCAGCTGCAG
TGTGGGAATCACTACAGCAAGAAGCTCGCCAGGCCCCCCGTCCGAATAACTTGCACACTCTGTGCGGTGC
CCCGGTGCATGTTCGGGAGCGCGGCACAGGCTCCGAAACCAACCAGGAGACGCTGCGGGCTACAGCGCCT
GCACTCCCCATGGCCCCTGCGCCCCCACTGCTGGCGGCTGCTCTGGCTCTGGCCTACCTCCTGAGGCCTC
TGGCCTAG

Translation (165 aa):
MMRCCRRRCCCRQPPHALRPLLLLPLVLLPPLAAAAAGPNRCDTIYQGFAECLIRLGDSMGRGGELETIC
RSWNDFHACASQVLSGCPEEAAAVWESLQQEARQAPRPNNLHTLCGAPVHVRERGTGSETNQETLRATAP
ALPMAPAPPLLAAALALAYLLRPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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