NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10828.1 Public Homo sapiens 16 PHAF1 24 110 108 CCDS HistoryNCBI Gene:80262Re-query CCDS DB by CCDS ID:10828.1Re-query CCDS DB by GeneID:80262See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219139.8 ENSP00000219139.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219139.8Link to Ensembl Protein Viewer:ENSP00000219139.3Re-query CCDS DB by Nucleotide ID:ENST00000219139Re-query CCDS DB by Protein ID:ENSP00000219139
Original member Current member EBI ENST00000569600.5 ENSP00000455182.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569600.5Link to Ensembl Protein Viewer:ENSP00000455182.1Re-query CCDS DB by Nucleotide ID:ENST00000569600Re-query CCDS DB by Protein ID:ENSP00000455182
Original member Current member NCBI NM_001320540.2 NP_001307469.1 Accepted alive Link to Nucleotide Sequence:NM_001320540.2Link to Protein Sequence:NP_001307469.1Re-query CCDS DB by Nucleotide ID:NM_001320540Re-query CCDS DB by Protein ID:NP_001307469Link to BLAST:NP_001307469.1
Original member Current member NCBI NM_001320541.2 NP_001307470.1 Accepted alive Link to Nucleotide Sequence:NM_001320541.2Link to Protein Sequence:NP_001307470.1Re-query CCDS DB by Nucleotide ID:NM_001320541Re-query CCDS DB by Protein ID:NP_001307470Link to BLAST:NP_001307470.1
Original member Current member NCBI NM_001320542.2 NP_001307471.1 Accepted alive Link to Nucleotide Sequence:NM_001320542.2Link to Protein Sequence:NP_001307471.1Re-query CCDS DB by Nucleotide ID:NM_001320542Re-query CCDS DB by Protein ID:NP_001307471Link to BLAST:NP_001307471.1
Original member Current member NCBI NM_025187.5 NP_079463.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025187.5Link to Protein Sequence:NP_079463.2Re-query CCDS DB by Nucleotide ID:NM_025187Re-query CCDS DB by Protein ID:NP_079463Link to BLAST:NP_079463.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307469.1 422 Q9BSU1-1 422 100% 0 0
NP_001307470.1 422 Q9BSU1-1 422 100% 0 0
NP_001307471.1 422 Q9BSU1-1 422 100% 0 0
NP_079463.2 422 Q9BSU1-1 422 100% 0 0

Chromosomal Locations for CCDS 10828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67110176 67110239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67120112 67120194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67125959 67126042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67131286 67131329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67132446 67132525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67132817 67132911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67134168 67134265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67134355 67134467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67139984 67140117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67140511 67140594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67144294 67144376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67144834 67144877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67145376 67145419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67145570 67145628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67146278 67146350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67147045 67147131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCTGGACCTGGAGGTAGTGCCCGAACGCTCTCTGGGGAACGAGCAATGGGAATTCACGCTGGGAATGC
CTCTGGCTCAGGCAGTAGCCATTCTTCAGAAGCACTGTCGCATCATCAAAAACGTCCAGGTTCTCTACAG
TGAACAGTCTCCTCTAAGCCATGACCTCATTCTTAACCTGACTCAGGACGGGATCAAACTAATGTTTGAT
GCTTTCAATCAGAGACTTAAGGTGATCGAAGTATGTGATTTGACTAAAGTAAAGTTAAAATATTGTGGCG
TGCATTTTAATTCTCAGGCCATAGCTCCTACCATTGAACAGATTGACCAGTCTTTTGGCGCAACCCATCC
TGGAGTGTACAACTCCGCTGAGCAGCTCTTCCATCTCAACTTCAGAGGACTGTCTTTCTCTTTTCAGTTA
GACTCATGGACTGAGGCTCCAAAGTATGAGCCCAATTTTGCCCATGGCCTGGCTTCTCTCCAGATACCCC
ATGGAGCAACTGTAAAACGAATGTACATCTACAGTGGCAACAGCCTGCAGGATACCAAGGCTCCCATGAT
GCCTCTGAGCTGTTTCCTGGGCAATGTCTATGCTGAGAGTGTAGATGTTCTTCGAGATGGAACTGGACCT
GCAGGTTTACGACTTCGCCTACTTGCTGCAGGTTGTGGACCTGGCCTATTAGCAGATGCCAAGATGCGGG
TATTTGAACGTTCAGTGTATTTTGGTGATTCCTGCCAAGATGTTCTTAGCATGCTTGGCTCTCCACACAA
AGTCTTCTATAAATCAGAAGACAAGATGAAAATTCATTCTCCTTCCCCTCATAAACAAGTTCCATCGAAG
TGTAATGACTACTTTTTTAACTACTTCACTCTTGGAGTGGACATCCTCTTTGATGCGAATACACACAAAG
TGAAGAAGTTTGTTCTACACACCAATTACCCTGGGCATTATAATTTCAACATTTATCATCGCTGTGAGTT
CAAGATCCCACTAGCCATAAAGAAAGAAAACGCAGATGGTCAGACAGAAACATGCACGACCTACAGCAAG
TGGGACAACATCCAGGAGCTCCTGGGCCACCCTGTGGAGAAGCCTGTTGTCCTGCACAGGTCTTCCTCCC
CAAACAACACCAACCCATTTGGTTCCACATTCTGCTTTGGTCTTCAGCGAATGATCTTTGAGGTCATGCA
GAACAACCACATTGCCTCGGTGACCCTGTATGGCCCCCCCAGGCCTGGTAGCCACCTGAGAACAGCGGAA
CTCCCCTAG

Translation (422 aa):
MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFD
AFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQL
DSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPMMPLSCFLGNVYAESVDVLRDGTGP
AGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSK
CNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNIYHRCEFKIPLAIKKENADGQTETCTTYSK
WDNIQELLGHPVEKPVVLHRSSSPNNTNPFGSTFCFGLQRMIFEVMQNNHIASVTLYGPPRPGSHLRTAE
LP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH