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Report for CCDS10599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10599.1 Public Homo sapiens 16 IGSF6 24 110 108 CCDS HistoryNCBI Gene:10261Re-query CCDS DB by CCDS ID:10599.1Re-query CCDS DB by GeneID:10261See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10599.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268389.6 ENSP00000268389.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268389.6Link to Ensembl Protein Viewer:ENSP00000268389.4Re-query CCDS DB by Nucleotide ID:ENST00000268389Re-query CCDS DB by Protein ID:ENSP00000268389
Original member Current member NCBI NM_005849.4 NP_005840.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005849.4Link to Protein Sequence:NP_005840.2Re-query CCDS DB by Nucleotide ID:NM_005849Re-query CCDS DB by Protein ID:NP_005840Link to BLAST:NP_005840.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005840.2 241 O95976 241 100% 0 0

Chromosomal Locations for CCDS 10599.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21641534 21641593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21643074 21643154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21643548 21643598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21644290 21644396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21647133 21647492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21652532 21652598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGGGACTGCGAGCAGAAGCAACATCGCTCGCCATCTGCAAACCAATCTCATTCTATTTTGTGTCGGTG
CTGTGGGCGCCTGTACTCTCTCTGTCACACAACCGTGGTACCTAGAAGTGGACTACACTCATGAGGCCGT
CACCATAAAGTGTACCTTCTCCGCAACCGGATGCCCTTCTGAGCAACCAACATGCCTGTGGTTTCGCTAC
GGTGCTCACCAGCCTGAGAACCTGTGCTTGGACGGGTGCAAAAGTGAGGCAGACAAGTTCACAGTGAGGG
AGGCCCTCAAAGAAAACCAAGTTTCCCTCACTGTAAACAGAGTGACTTCAAATGACAGTGCAATTTACAT
CTGTGGAATAGCATTCCCCAGTGTGCCGGAAGCGAGAGCTAAACAGACAGGAGGAGGGACCACACTGGTG
GTAAGAGAAATTAAGCTGCTCAGCAAGGAACTGCGGAGCTTCCTGACAGCTCTTGTATCACTGCTCTCTG
TCTATGTGACCGGTGTGTGCGTGGCCTTCATACTCCTCTCCAAATCAAAATCCAACCCTCTAAGAAACAA
AGAAATAAAAGAAGACTCACAAAAGAAGAAGAGTGCTCGGCGTATTTTTCAGGAAATTGCTCAAGAACTA
TACCATAAGAGACATGTGGAAACAAATCAGCAATCTGAGAAAGATAACAACACTTATGAAAACAGAAGAG
TACTTTCCAACTATGAAAGGCCATAG

Translation (241 aa):
MGTASRSNIARHLQTNLILFCVGAVGACTLSVTQPWYLEVDYTHEAVTIKCTFSATGCPSEQPTCLWFRY
GAHQPENLCLDGCKSEADKFTVREALKENQVSLTVNRVTSNDSAIYICGIAFPSVPEARAKQTGGGTTLV
VREIKLLSKELRSFLTALVSLLSVYVTGVCVAFILLSKSKSNPLRNKEIKEDSQKKKSARRIFQEIAQEL
YHKRHVETNQQSEKDNNTYENRRVLSNYERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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