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Report for CCDS10439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10439.1 Public Homo sapiens 16 IFT140 24 110 108 CCDS HistoryNCBI Gene:9742Re-query CCDS DB by CCDS ID:10439.1Re-query CCDS DB by GeneID:9742See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000426508.7 ENSP00000406012.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000426508.7Link to Ensembl Protein Viewer:ENSP00000406012.2Re-query CCDS DB by Nucleotide ID:ENST00000426508Re-query CCDS DB by Protein ID:ENSP00000406012
Original member Current member NCBI NM_014714.4 NP_055529.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014714.4Link to Protein Sequence:NP_055529.2Re-query CCDS DB by Nucleotide ID:NM_014714Re-query CCDS DB by Protein ID:NP_055529Link to BLAST:NP_055529.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055529.2 1462 Q96RY7-1 1462 100% 0 0

Chromosomal Locations for CCDS 10439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1510944 1511150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1518216 1518357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1519881 1520047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1520131 1520343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1520602 1520808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1523518 1523700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1523828 1523956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1524552 1524695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1524784 1524916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1525231 1525326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1525887 1526077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1526619 1526796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1557935 1558134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1561985 1562116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1563997 1564162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1566161 1566291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1568217 1568334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1571407 1571534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1580759 1580850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1583314 1583386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1584217 1584420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1586130 1586275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1587198 1587304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1587933 1588024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1589605 1589780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1592176 1592318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1592467 1592588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1602370 1602591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1607120 1607266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4389 nt):
ATGGCCCTCTATTATGACCACCAGATAGAAGCCCCGGATGCAGCAGGGTCACCCTCATTTATCAGCTGGC
AC
CCTGTCCATCCATTCTTGGCAGTTGCTTACATCAGCACAACCTCAACAGGCAGCGTGGATATTTACCT
G
GAGCAAGGGGAGTGCGTGCCAGATACACACGTCGAGAGGCCGTTCCGGGTTGCTTCCCTGTGCTGGCAC
CCG
ACGCGGCTGGTGCTGGCTGTGGGCTGGGAGACTGGAGAAGTGACGGTGTTTAACAAGCAGGACAAGG
AG
CAGCACACGATGCCCCTGACACACACAGCCGACATCACCGTGCTCCGTTGGAGCCCCAGTGGAAACTG
C
CTGCTGTCTGGGGACAGGCTTGGTGTCTTGCTCTTGTGGAGGTTGGACCAAAGGGGCCGAGTGCAAGGG
ACG
CCTCTGCTGAAACACGAGTATGGGAAACACCTCACGCACTGCATCTTCCGGCTCCCCCCTCCTGGCG
A
G
GACCTGGTTCAGTTGGCAAAGGCAGCTGTGAGCGGTGATGAGAAAGCCCTGGACATGTTTAACTGGAA
G
AAGAGCAGTTCTGGAAGTTTGCTGAAGATGGGGTCTCACGAGGGGCTGTTGTTCTTTGTCAGTCTGATG
GAC
GGGACAGTGCACTATGTGGATGAGAAGGGCAAGACCACTCAGGTGGTGTCCGCAGACAGCACGATTC
AG
ATGCTGTTCTACATGGAGAAGAGGGAGGCACTGGTGGTGGTCACAGAGAACCTCCGGCTGTCCCTGTA
C
ACGGTGCCTCCTGAGGGCAAAGCAGAAGAAGTGATGAAGGTCAAGCTGAGCGGGAAAACCGGCCGCCGG
GCA
GACATCGCTTTGATTGAAGGCAGCCTTCTCGTGATGGCCGTCGGGGAGGCTGCCCTCAGATTCTGGG
AC
ATAGAACGAGGAGAGAATTATATACTGAGTCCAGATGAGAAGTTTGGCTTTGAGAAAGGAGAGAATAT
G
AACTGTGTGTGTTACTGTAAAGTCAAAGGTCTTCTGGCCGCTGGTACCGACAGAGGGCGAGTAGCCATG
TGG
AGGAAAGTACCAGACTTCCTGGGCAGCCCCGGGGCAGAGGGCAAGGACAGGTGGGCCCTTCAGACCC
CT
ACCGAGCTCCAAGGAAACATCACGCAAATCCAGTGGGGTTCCAGGAAGAACCTGCTGGCAGTGAACAG
C
GTCATCTCCGTGGCCATCCTCAGCGAGCGGGCCATGTCGTCACACTTCCACCAGCAAGTGGCCGCCATG
CAG
GTCTCCCCGAGTCTGCTGAATGTGTGCTTCCTGTCCACGGGGGTCGCACACAGCCTGCGCACCGACA
TG
CACATCAGTGGAGTGTTTGCCACCAAGGATGCTGTCGCAGTCTGGAACGGAAGGCAGGTGGCGATCTT
C
GAGCTTTCTGGAGCCGCGATACGGAGTGCAGGGACCTTCTTGTGTGAGACGCCTGTGTTAGCAATGCAT
GAA
GAAAACGTTTACACGGTGGAGTCAAACCGAGTTCAAGTTCGAACCTGGCAGGGGACTGTCAAACAAC
TC
CTCCTTTTCTCGGAGACTGAGGGGAATCCCTGCTTCTTGGACATCTGTGGGAATTTCCTGGTTGTAGG
G
ACAGACTTGGCTCACTTTAAAAGCTTTGATCTTTCCCGAAGAGAGGCCAAAGCACACTGTAGCTGCAGG
AGC
CTGGCGGAGCTGGTCCCTGGGGTGGGGGGCATCGCTTCTCTGCGGTGCAGCAGCAGCGGGAGCACCA
TC
AGCATCCTCCCCAGCAAGGCTGACAACAGCCCTGATTCCAAAATCTGCTTCTACGATGTTGAAATGGA
C
ACAGTGACCGTCTTTGACTTCAAGACTGGACAAATTGATCGGAGAGAGACGCTGTCCTTTAATGAGCAA
GAG
ACTAATAAGAGCCACCTCTTTGTGGATGAGGGACTGAAAAATTATGTTCCCGTGAACCACTTCTGGG
AC
CAGAGTGAGCCCCGGCTGTTTGTATGCGAAGCCGTGCAGGAGACGCCGCGCTCCCAGCCTCAGTCTGC
A
AACGGGCAGCCCCAAGATGGGCGCGCTGGCCCTGCGGCAGATGTTTTGATCCTGTCCTTCTTCATTTCC
GAA
GAGCACGGCTTCCTGCTTCATGAGAGCTTCCCCCGGCCTGCCACCTCCCACAGTCTCCTGGGGATGG
AA
GTGCCTTATTACTACTTCACAAGAAAGCCCGAAGAAGCAGACAGAGAAGACGAGGTGGAGCCTGGGTG
C
CACCACATCCCTCAGATGGTGTCCAGGAGACCCCTGCGAGACTTTGTGGGGCTGGAGGACTGCGACAAG
GCC
ACCCGGGACGCCATGCTCCACTTCAGCTTCTTTGTCACCATAGGAGACATGGACGAAGCCTTCAAAT
CC
ATCAAGCTCATCAAAAGTGAGGCCGTCTGGGAGAACATGGCGCGCATGTGCGTGAAGACCCAGCGGCT
G
GACGTGGCCAAGGTGTGCCTGGGGAACATGGGCCATGCCCGCGGGGCCCGAGCGCTGCGTGAGGCGGAG
CAG
GAGCCGGAGCTAGAGGCCCGCGTGGCCGTGCTGGCCACGCAGCTGGGCATGCTGGAGGACGCCGAGC
AG
CTGTACAGGAAGTGCAAGCGCCACGACCTCCTGAACAAGTTCTACCAGGCTGCGGGCCGGTGGCAGGA
G
GCCCTCCAGGTAGCCGAGCACCACGATCGCGTGCACCTGCGCAGCACCTACCACCGCTATGCCGGGCAC
CTG
GAGGCCAGCGCCGACTGCAGCCGGGCCCTCAGTTACTACGAGAAGTCGGACACGCACCGCTTCGAGG
TG
CCCAGGATGCTGTCGGAGGACCTGCCGTCCCTGGAGCTCTACGTGAATAAAATGAAGGATAAGACCCT
G
TGGCGGTGGTGGGCGCAGTACCTGGAGAGCCAGGGCGAGATGGACGCCGCGCTGCACTACTACGAGCTG
GCC
CGGGACCACTTCTCCCTGGTCCGCATCCACTGCTTCCAGGGCAATGTCCAGAAGGCTGCGCAAATAG
CC
AACGAGACAGGAAACCTGGCGGCCTCCTACCACCTCGCCCGCCAGTACGAGAGCCAGGAGGAGGTCGG
G
CAGGCGGTGCACTTCTACACCCGGGCACAGGCCTTCAAGAATGCCATCCGCCTGTGCAAGGAGAACGGC
CTG
GACGACCAGCTCATGAACTTGGCCCTGCTGAGCTCCCCCGAGGACATGATCGAGGCGGCCCGATACT
AC
GAGGAGAAGGGCGTGCAGATGGACAGGGCGGTCATGCTGTACCACAAGGCTGGCCACTTCTCCAAGGC
C
CTGGAGCTGGCCTTTGCCACCCAGCAGTTTGTGGCCCTACAGCTCATAGCAGAGGACCTGGATGAGACG
TCA
GACCCTGCGCTCCTGGCCCGCTGCTCCGACTTCTTCATCGAGCACAGTCAGTACGAGAGGGCGGTAG
AG
CTGCTGCTGGCTGCCAGGAAGTATCAGGAAGCCCTGCAGCTGTGCCTGGGGCAGAACATGAGCATCAC
C
GAGGAGATGGCGGAAAAGATGACCGTGGCCAAGGACTCCTCGGACCTGCCTGAGGAGTCGCGGCGGGAG
CTG
CTGGAGCAGATAGCAGACTGCTGCATGCGCCAGGGCAGCTACCACCTGGCCACCAAGAAGTACACGC
AG
GCCGGCAACAAGCTGAAGGCCATGAGGGCGCTGCTCAAATCCGGAGACACGGAGAAAATCACGTTCTT
C
GCGAGCGTGTCCAGGCAGAAGGAAATCTACATCATGGCTGCTAACTACCTGCAGTCCCTGGACTGGCGG
AAG
GAGCCGGAGATCATGAAGAACATCATCGGCTTCTACACCAAGGGGCGGGCCCTGGACCTCCTGGCTG
GC
TTTTATGACGCTTGTGCCCAGGTGGAGATTGATGAATACCAGAACTACGACAAAGCCCACGGGGCGCT
G
ACCGAGGCCTACAAGTGCCTGGCCAAGGCCAAGGCCAAGAGCCCCCTGGACCAGGAGACCAGGCTGGCG
CAG
CTGCAGAGCAGGATGGCACTGGTGAAGAGGTTCATCCAGGCCCGCAGGACGTACACAGAGGACCCCA
AG
GAGTCCATCAAGCAGTGTGAGCTGCTCCTGGAGGAACCAGACCTGGACAGCACCATCCGCATCGGGGA
C
GTCTATGGCTTCCTGGTGGAGCACTACGTGCGGAAGGAGGAATACCAGACGGCCTACAGATTCCTGGAG
GAG
ATGCGGCGGCGGCTTCCCTTGGCCAACATGTCCTACTACGTGAGCCCGCAGGCCGTGGACGCCGTGC
AC
CGGGGGCTGGGTCTCCCACTGCCACGCACCGTCCCCGAGCAGGTCCGCCACAACAGCATGGAGGACGC
C
AGGGAGCTGGACGAGGAGGTGGTGGAAGAGGCAGATGACGACCCCTGA


Translation (1462 aa):
MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVERPFRVASLCWH
P
TRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGDR
LGVLLLWRLDQRGRVQG
T
PLLKHEYGKHLTHCIFRLPPPG
EDLVQLAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLM
D
GTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRR
A
DIALIEGSLLVMAVGEAAL
RFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAM
W
RKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQ
WGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAM
Q
VSPSLLNVCFLSTGVAHSLRTDMHISGVFATK
DAVAVWNGRQVAIFELSGAAIRSAGTFLCETPVLAMH
E
ENVYTVESNRVQVRTWQ
GTVKQLLLFSETEGNPCFLDICGNFLVVGTDLAHFKSFDLSRREAKAHCSCR
S
LAELVPGVGGIASLRCSSSGSTISILPSK
ADNSPDSKICFYDVEMDTVTVFDFKTGQIDRRETLSFNEQ
E
TN
KSHLFVDEGLKNYVPVNHFWDQSEPRLFVCEAVQETPRSQPQSANGQPQDGRAGPAADVLILSFFIS
E
EHGFLLHESFPRPATSHSLLGMEVPYYYFTRK
PEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDK
A
TRDAMLHFSFFVTIGDMDEAFKSIKLIK
SEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE
Q
EPELEARVAVLATQLGML
EDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRSTYHRYAGH
L
EASADCSRALS
YYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYEL
A
RDHFSLVRIHCFQGNVQK
AAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENG
L
DDQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLYHK
AGHFSKALELAFATQQFVALQLIAEDLDET
S
DPALLARCSDFFIEHSQYERAVELLLAARK
YQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRE
L
LEQIADCCMRQGSYHLATKKYTQAGNKLK
AMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWR
K
EPEIMKNIIGFYTKGRALDLLAGFYDACAQ
VEIDEYQNYDKAHGALTEAYKCLAKAKAKSPLDQETRLA
Q
LQSRMALVKRFIQAR
RTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYGFLVEHYVRKEEYQTAYRFLE
E
MRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVPEQVRHNSMEDARELDEEVVEEADDDP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser