NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10396.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10396.2 Public Homo sapiens 16 SNRNP25 24 110 108 CCDS HistoryNCBI Gene:79622Re-query CCDS DB by CCDS ID:10396.2Re-query CCDS DB by GeneID:79622See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10396.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293861.8 ENSP00000293861.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293861.8Link to Ensembl Protein Viewer:ENSP00000293861.3Re-query CCDS DB by Nucleotide ID:ENST00000293861Re-query CCDS DB by Protein ID:ENSP00000293861
Original member Current member NCBI NM_024571.4 NP_078847.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024571.4Link to Protein Sequence:NP_078847.2Re-query CCDS DB by Nucleotide ID:NM_024571Re-query CCDS DB by Protein ID:NP_078847Link to BLAST:NP_078847.2

Chromosomal Locations for CCDS 10396.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 54017 54058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55459 55549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55777 55882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56539 56613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57086 57143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGTGGTGCAGGACCCGCTGCTCTGCGATCTGCCGATCCAGGTTACTCTGGAAGAAGTCAACTCCCAAA
TAGCCCTAGAATACGGCCAGGCAATGACGGTCCGAGTGTGCAAGATGGATGGAGAAGTAATGCCCGTGGT
TGTAGTGCAGAGTGCCACAGTCCTGGACCTGAAGAAGGCCATCCAGAGATACGTGCAGCTCAAGCAGGAG
CGTGAAGGGGGCATTCAGCACATCAGCTGGTCCTACGTGTGGAGGACGTACCATCTGACCTCTGCAGGAG
AGAAACTCACGGAAGACAGAAAGAAGCTCCGAGACTACGGCATCCGGAATCGAGACGAGGTTTCCTTCAT
CAAAAAGCTGAGGCAAAAGTGA

Translation (123 aa):
MVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQE
REGGIQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH