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Report for CCDS10395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10395.1 Public Homo sapiens 16 POLR3K 24 110 108 CCDS HistoryNCBI Gene:51728Re-query CCDS DB by CCDS ID:10395.1Re-query CCDS DB by GeneID:51728See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293860.6 ENSP00000293860.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293860.6Link to Ensembl Protein Viewer:ENSP00000293860.5Re-query CCDS DB by Nucleotide ID:ENST00000293860Re-query CCDS DB by Protein ID:ENSP00000293860
Original member Current member NCBI NM_016310.5 NP_057394.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016310.5Link to Protein Sequence:NP_057394.3Re-query CCDS DB by Nucleotide ID:NM_016310Re-query CCDS DB by Protein ID:NP_057394Link to BLAST:NP_057394.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057394.3 108 Q9Y2Y1 108 100% 0 0

Chromosomal Locations for CCDS 10395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 47430 47557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 51558 51645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 53476 53586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGCTGCTGTTCTGCCCCGGCTGCGGGAACGGGCTGATCGTGGAGGAGGGACAACGCTGCCACCGCTTCG
CCTGCAACACGTGCCCCTACGTGCACAACATCACCCGCAAGGTAACAAATCGGAAGTACCCAAAACTGAA
AGAAGTGGATGATGTGCTTGGTGGAGCAGCTGCCTGGGAGAATGTTGACTCTACTGCAGAGTCGTGTCCC
AAATGCGAACATCCTCGTGCTTACTTCATGCAGCTTCAGACCCGCTCTGCAGATGAGCCGATGACCACCT
TCTACAAGTGCTGCAATGCTCAGTGTGGACACCGCTGGAGGGATTAG

Translation (108 aa):
MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCP
KCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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