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Report for CCDS10366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10366.1 Public Homo sapiens 15 HDDC3 24 110 108 CCDS HistoryNCBI Gene:374659Re-query CCDS DB by CCDS ID:10366.1Re-query CCDS DB by GeneID:374659See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330334.7 ENSP00000330721.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330334.7Link to Ensembl Protein Viewer:ENSP00000330721.3Re-query CCDS DB by Nucleotide ID:ENST00000330334Re-query CCDS DB by Protein ID:ENSP00000330721
Original member Current member NCBI NM_198527.4 NP_940929.1 Accepted alive Link to Nucleotide Sequence:NM_198527.4Link to Protein Sequence:NP_940929.1Re-query CCDS DB by Nucleotide ID:NM_198527Re-query CCDS DB by Protein ID:NP_940929Link to BLAST:NP_940929.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940929.1 140 Q8N4P3-2 140 100% 0 0

Chromosomal Locations for CCDS 10366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 90931543 90931556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90931704 90931944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90932055 90932110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 90932429 90932540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGGCTCTGAGGCGGCGCAGCTGCTGGAGGCTGCCGACTTCGCGGCTCGCAAGCACCGGCAGCAGCGGC
GGAAGGACCCCGAGGGGACCCCCTACATCAACCACCCCATCGGTGTGGCACGGATCCTGACCCACGAGGC
GGGAATCACTGACATTGTGGTGTTACAGGCGGCCCTGCTCCATGACACGGTGGAGGACACAGACACCACC
CTGGATGAGGTGGAGCTACACTTTGGGGCACAAGTGCGGCGCCTGGTGGAGGAGGTAACAGATGACAAGA
CTCTGCCCAAGCTGGAGAGAAAGAGGCTGCAGGTGGAGCAAGCGCCCCACAGTAGCCCCGGGGCCAAACT
GGTGAAGCTGGCAGACAAGCTGTACAATCTGAGGGACCTGAATCGCTGCACCCCAGAGGTAAAAATACAA
TAG

Translation (140 aa):
MGSEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTT
LDEVELHFGAQVRRLVEEVTDDKTLPKLERKRLQVEQAPHSSPGAKLVKLADKLYNLRDLNRCTPEVKIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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