NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1005.1 Public Homo sapiens 1 THEM5 24 110 108 CCDS HistoryNCBI Gene:284486Re-query CCDS DB by CCDS ID:1005.1Re-query CCDS DB by GeneID:284486See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1005.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368817.10 ENSP00000357807.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368817.10Link to Ensembl Protein Viewer:ENSP00000357807.4Re-query CCDS DB by Nucleotide ID:ENST00000368817Re-query CCDS DB by Protein ID:ENSP00000357807
Original member Current member NCBI NM_182578.4 NP_872384.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182578.4Link to Protein Sequence:NP_872384.2Re-query CCDS DB by Nucleotide ID:NM_182578Re-query CCDS DB by Protein ID:NP_872384Link to BLAST:NP_872384.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872384.2 247 Q8N1Q8 247 100% 0 0

Chromosomal Locations for CCDS 1005.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151847371 151847414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151847738 151847862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151848182 151848292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151851053 151851191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151852258 151852459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151853443 151853565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGATAAGGAGATGCTTCCAGGTGGCAGCAAGACTTGGCCACCACAGAGGCCTTCTTGAGGCCCCCCGTA
TCCTGCCCAGACTCAACCCTGCCTCAGCATTTGGATCCTCCACAGACTCCATGTTCTCAAGATTCTTGCC
AGAGAAGACAGACTTGAAGGATTATGCTCTTCCCAATGCCAGCTGGTGTTCGGACATGCTGAGCCTGTAC
CAAGAATTTCTGGAGAAGACTAAGTCTAGCGGCTGGATCAAGCTGCCCTCCTTCAAGTCCAACAGAGACC
ACATCCGGGGACTCAAGCTCCCATCTGGACTGGCAGTTTCCTCAGACAAAGGTGACTGTCGCATCTTCAC
CAGGTGCATCCAAGTGGAAGGACAAGGCTTTGAGTATGTCATCTTTTTCCAGCCAACCCAGAAGAAGTCG
GTCTGTCTTTTCCAACCAGGCTCCTACCTGGAGGGGCCCCCAGGGTTTGCTCACGGCGGGTCCCTGGCAG
CCATGATGGACGAGACCTTTTCTAAAACTGCCTTCCTGGCTGGAGAGGGGCTGTTCACACTAAGTCTCAA
CATCAGGTTCAAAAACTTGATCCCCGTGGACTCTCTGGTTGTAATGGACGTAGAACTGGACAAGATTGAG
GACCAGAAGCTTTACATGTCCTGCATCGCCCACAGCAGAGACCAGCAGACAGTTTATGCCAAGTCCTCAG
GTGTTTTCCTTCAGCTGCAGTTGGAAGAAGAGTCTCCCCAGTAA

Translation (247 aa):
MIRRCFQVAARLGHHRGLLEAPRILPRLNPASAFGSSTDSMFSRFLPEKTDLKDYALPNASWCSDMLSLY
QEFLEKTKSSGWIKLPSFKSNRDHIRGLKLPSGLAVSSDKGDCRIFTRCIQVEGQGFEYVIFFQPTQKKS
VCLFQPGSYLEGPPGFAHGGSLAAMMDETFSKTAFLAGEGLFTLSLNIRFKNLIPVDSLVVMDVELDKIE
DQKLYMSCIAHSRDQQTVYAKSSGVFLQLQLEEESPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH